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BaseInfo

ncRNA ID	novel_zma_miR9997
Species	Zea mays
Class	miRNA
Genome position	Chr4:200156673-200156733 [-]
Reference genome	RefGen_v4
Source	SRR5099742
Length	22
Mature sequence(if miRNA)	40 - AUUUGGUUUGACUUUUGGUUUU - 61
Stem-loop(if miRNA)	AUUUGGUUUGA          U        U CCC            CUUUUGGUUU GGUUUUUG C   U            |||||||||| |||||||| |            GGAAACCAAA CCGAAAAC G   A ----------G          -        U AAA
Stem-loop sequence	AUUUGGUUUGACUUUUGGUUUUGGUUUUUGUCCCCUAAAAGUCAAAAGCCAAACCAAAGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544947.1	ncRNA:22   UUUUGGUUUUCAGUUUGGUUUA   1   ||||=|||||||||||=||||| targets:2292   AAAAUCAAAAGUCAAAUCAAAU   2313 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100273701 (LOC100273701), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550348.1	ncRNA:22   UUUUGGUUUUCAGUUUGGUUUA   1   |||=|||||||||||||||||* targets:12   AAAGCCAAAAGUCAAACCAAAC   33 Target Full Sequence	2.0	PREDICTED: Zea mays coatomer subunit epsilon-1-like (LOC103650709), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT054933.2	ncRNA:22   UUUUGGUUUUCAGUUUGGUUUA   1   |||=|||||||||||||||||* targets:1105   AAAGCCAAAAGUCAAACCAAAC   1126 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0071E07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152768.1	ncRNA:22   UUUUGGUUUUCAGUUUGGUUUA   1   |||=|||||||||||||||||* targets:1105   AAAGCCAAAAGUCAAACCAAAC   1126 Target Full Sequence	2.0	Zea mays uncharacterized LOC100279813 (LOC100279813), mRNA	NA	coding protein	psRNATarget
XM_008647387.1	ncRNA:22   UUUUGGUUUUCAGUUUGGUUUA   1   |||=|||||||||||||||||* targets:1144   AAAGCCAAAAGUCAAACCAAAG   1165 Target Full Sequence	2.0	PREDICTED: Zea mays probable pectinesterase 56 (LOC103627040), mRNA	NA	coding protein	psRNATarget
XM_020537669.1	ncRNA:22   UUUUGGUUUUCAGUUUGGUUUA   1   |||=|||||||||||||||||* targets:3   AAAGCCAAAAGUCAAACCAAAC   24 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103626443 (LOC103626443), mRNA	NA	coding protein	psRNATarget
EZ054115.1	ncRNA:22   UUUUGGUUUUCAGUUUGGUUUA   1   |||=|||||||||||||||||* targets:88   AAAGCCAAAAGUCAAACCAAAC   109 Target Full Sequence	2.0	TSA: Zea mays contig55237, mRNA sequence	NA	coding protein	psRNATarget
LQ242254.1	ncRNA:22   UUUUGGUUUUCAGUUUGGUUUA   1   |||=|||||||||||||||||* targets:46   AAAGCCAAAAGUCAAACCAAAC   67 Target Full Sequence	2.0	Sequence 8249 from Patent EP2985353	NA	coding protein	psRNATarget
JB170585.1	ncRNA:22   UUUUGGUUUUCAGUUUGGUUUA   1   |||=|||||||||||||||||* targets:46   AAAGCCAAAAGUCAAACCAAAC   67 Target Full Sequence	2.0	Sequence 8249 from Patent EP2559767	NA	coding protein	psRNATarget
HI410124.1	ncRNA:22   UUUUGGUUUUCAGUUUGGUUUA   1   |||=|||||||||||||||||* targets:46   AAAGCCAAAAGUCAAACCAAAC   67 Target Full Sequence	2.0	Sequence 8249 from Patent EP2074227	NA	coding protein	psRNATarget
EU948178.1	ncRNA:22   UUUUG-GUUUUCAGUUUGGUUUA   1   |||||-||||||||||||||||* targets:247   AAAACACAAAAGUCAAACCAAAG   269 Target Full Sequence	3.0	Zea mays clone 370846 mRNA sequence	NA	coding protein	psRNATarget
XM_020548185.1	ncRNA:22   UUUUGGUUUUCAGUUUGGUUUA   1   =|==*||||||||||||||||* targets:1583   GAGGGCAAAAGUCAAACCAAAC   1604 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103646073 (LOC103646073), transcript variant X3, mRNA	NA	coding protein	psRNATarget