Search result

BaseInfo

ncRNA ID	novel_zma_miR9994
Species	Zea mays
Class	miRNA
Genome position	Chr4:227482316-227482468 [-]
Reference genome	RefGen_v4
Source	SRR5099742
Length	25
Mature sequence(if miRNA)	129 - UGUUUGUUUGGAUUUAUAAUCUGCC - 153
Stem-loop(if miRNA)	--           AU                               A     A         -------U        AA   UGUUUGUUUGG  UUAUAAUCUGCCUAGAUUAUAUAAUCCAAUA AUUUU AACUAACAC        UAGUUCAA  U   |||||||||||  ||||||||||||||||||||||||||||||| ||||| |||||||||        ||||||||   ACAAACAAACC  AAUAUUAGACGGGUCUAAUAUAUUAGGUUGU UAAAA UUGAUUGUG        AUUAGGUU  U CC           CU                               G     C         UCUAAUAU        GU
Stem-loop sequence	UGUUUGUUUGGAUUUAUAAUCUGCCUAGAUUAUAUAAUCCAAUAAAUUUUAAACUAACACUUAGUUCAAAAUUUGUUGGAUUAUAUAAUCUGUGUUAGUUCAAAAUGUGUUGGAUUAUAUAAUCUGGGCAGAUUAUAAUCCCAAACAAACACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY107155.1	ncRNA:25   CCGUCUAAUAUUUAGGUUUGUUUGU   1   ||||||||||||*|||||||||||| targets:622   GGCAGAUUAUAAUUCCAAACAAACA   646 Target Full Sequence	1.5	Zea mays PCO068737 mRNA sequence	NA	coding protein	psRNATarget
XM_008648079.2	ncRNA:25   CCG-UCUAAUAUUUAGGUUUGUUUGU   1   |||-|||||||||*|||||||||||| targets:2009   GGCUAGAUUAUAAUUCCAAACAAACA   2034 Target Full Sequence	1.5	PREDICTED: Zea mays galactoside 2-alpha-L-fucosyltransferase (LOC103627780), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008669523.2	ncRNA:25   CCGUCUAAUAUUUAGGUUUGUUUGU   1   |*||||||||||*|||||||||||| targets:2123   GACAGAUUAUAAUUCCAAACAAACA   2147 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100278420), transcript variant X1, mRNA	NA	coding protein	psRNATarget