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BaseInfo

ncRNA ID	novel_zma_miR9993
Species	Zea mays
Class	miRNA
Genome position	Chr4:230528112-230528160 [-]
Reference genome	RefGen_v4
Source	SRR5099742;SRR5100248
Length	24
Mature sequence(if miRNA)	1 - UUGACACUCGGCAAAGAAACUCUU - 24
Stem-loop(if miRNA)	--   -CC                A   GAG   CUUUGCCGAGUGUCAA A   |||   ||||||||||||||||   CUC   GAAACGGCUCACAGUU A UU   AAA                A
Stem-loop sequence	GAGCCCUUUGCCGAGUGUCAAAAAAUUGACACUCGGCAAAGAAACUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001165647.1	ncRNA:24   UUCUCAAAGAAACGGCUCACAGUU   1   ||||**||||||||=||||||||| targets:40   AAGAAAUUCUUUGCUGAGUGUCAA   63 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT055423.1	ncRNA:24   UUCUCAAAGAAACGGCUCACAGUU   1   ||||**||||||||=||||||||| targets:40   AAGAAAUUCUUUGCUGAGUGUCAA   63 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   UUCUCAAAGAAACGGCUCACAGUU   1   ||||**||||||||=||||||||| targets:2059   AAGAAAUUCUUUGCUGAGUGUCAA   2082 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   UUCUCAAAGAAACGGCUCACAGUU   1   ||||**||||||||=||||||||| targets:2059   AAGAAAUUCUUUGCUGAGUGUCAA   2082 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
EZ050721.1	ncRNA:24   UUCUCAAAGAAACGGCUCACAGUU   1   =|||-|*|=||||||||||||||* targets:46   GAGA-UCUUUUUGCCGAGUGUCAC   68 Target Full Sequence	3.0	TSA: Zea mays contig51841, mRNA sequence	NA	coding protein	psRNATarget