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BaseInfo

ncRNA ID	novel_zma_miR9990
Species	Zea mays
Class	miRNA
Genome position	Chr4:20821705-20821865 [+]
Reference genome	RefGen_v4
Source	SRR5099742
Length	23
Mature sequence(if miRNA)	139 - UUUUUUCAUCUUCCGCAGCGGUU - 161
Stem-loop(if miRNA)	--                            A     U -               -                    C     C   CCGCUGUGGGAGAUGAAAAAAUAGGGGG AAAUA G GGAAAAAGUGAUAUA GGGGGAAAAUUUAGGGGUAA GGUUG G   |||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||||||||||||||||||| |||||   GGCGACGCCUUCUACUUUUUUAUCCCCC UUUAU C CCUUUUUCACUAUAU CCCCUUUUUAAAUCUCCAUU CCGAU G UU                            C     C U               A                    -     A
Stem-loop sequence	CCGCUGUGGGAGAUGAAAAAAUAGGGGGAAAAUAUGGGAAAAAGUGAUAUAGGGGGAAAAUUUAGGGGUAACGGUUGCGGAUAGCCUUACCUCUAAAUUUUUCCCCAUAUAUCACUUUUUCCUCCUAUUUCCCCCCUAUUUUUUCAUCUUCCGCAGCGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT064747.2	ncRNA:23   UUGGCGACGCCUUCUACUUUUUU   1   |||||||||||=||||||||||| targets:104   AACCGCUGCGGGAGAUGAAAAAA   126 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0101D21 mRNA, complete cds	NA	coding protein	psRNATarget
EU950133.1	ncRNA:23   UUGGCGACGCCUUCUACUUUUUU   1   |||||=||||||||||||||||| targets:822   AACCGUUGCGGAAGAUGAAAAAA   844 Target Full Sequence	1.0	Zea mays clone 462604 mRNA sequence	NA	coding protein	psRNATarget
XM_008681125.2	ncRNA:23   UUGGCGACGCCUUCUACUUUUUU   1   |||||||||||=||||||||||| targets:2065   AACCGCUGCGGGAGAUGAAAAAA   2087 Target Full Sequence	1.5	PREDICTED: Zea mays cytochrome P450 714C3-like (LOC103654294), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001175806.1	ncRNA:23   UUGGCGACG-CCUUCUACUUUUUU   1   =|==||*||-|||||||||||||| targets:862   GAUUGCAGCAGGAAGAUGAAAAAA   885 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383140 (AY104214), mRNA	NA	coding protein	psRNATarget
BT066349.1	ncRNA:23   UUGGCGACG-CCUUCUACUUUUUU   1   =|==||*||-|||||||||||||| targets:862   GAUUGCAGCAGGAAGAUGAAAAAA   885 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0074M02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548171.1	ncRNA:23   UUGGCGACGCCUUCUACUUUUUU   1   *||=||||*|*|||||||||||| targets:3967   UACUGCUGAGCAAGAUGAAAAAA   3989 Target Full Sequence	2.5	PREDICTED: Zea mays Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (LOC103646027), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670765.2	ncRNA:23   UUGGCGACGCCUUCUACUUUUUU   1   *||=||||*|*|||||||||||| targets:3872   UACUGCUGAGCAAGAUGAAAAAA   3894 Target Full Sequence	2.5	PREDICTED: Zea mays Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (LOC103646027), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT069263.2	ncRNA:23   UUGGCGACGCCUUCUACUUUUUU   1   ==||*||*||||||||||||||= targets:178   GGCCCCUACGGAAGAUGAAAAAG   200 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0016C03 mRNA, complete cds	NA	coding protein	psRNATarget