Search result

BaseInfo

ncRNA ID	novel_zma_miR9987
Species	Zea mays
Class	miRNA
Genome position	Chr4:209637878-209638045 [+]
Reference genome	RefGen_v4
Source	SRR5099742
Length	21
Mature sequence(if miRNA)	148 - UUUUGUAUAUGGAUGAGGUAA - 168
Stem-loop(if miRNA)	--                                               -CACUU                UUGUGCUUU   ACU  U   ACCUCAUCUAUAUACAAAAUUUUAUGGUCAAAUUCAUCUUACUCUAG      CAAAAAAGACAAUUUU         UGA   AC A   |||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||         |||   ||   UGGAGUAGGUAUAUGUUUUAAAGUACCAGUUUAAGUAGAAUGAGAUU      GUUUUUUCUGUUAAAG         ACU   UG C AA                                               AUCAAU                ---------   GUU  U
Stem-loop sequence	ACCUCAUCUAUAUACAAAAUUUUAUGGUCAAAUUCAUCUUACUCUAGCACUUCAAAAAAGACAAUUUUUUGUGCUUUUGAACUACUACUGUUUGUCAGAAAUUGUCUUUUUUGUAACUAUUAGAGUAAGAUGAAUUUGACCAUGAAAUUUUGUAUAUGGAUGAGGUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020542631.1	ncRNA:21   AAUGGAGUAGGUAUAUGUUUU   1   ||||||||||=|||||||||| targets:5174   UUACCUCAUCUAUAUACAAAA   5194 Target Full Sequence	1.5	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542629.1	ncRNA:21   AAUGGAGUAGGUAUAUGUUUU   1   ||||||||||=|||||||||| targets:4759   UUACCUCAUCUAUAUACAAAA   4779 Target Full Sequence	1.5	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542630.1	ncRNA:21   AAUGGAGUAGGUAUAUGUUUU   1   ||||||||||=|||||||||| targets:4697   UUACCUCAUCUAUAUACAAAA   4717 Target Full Sequence	1.5	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X2, mRNA	NA	coding protein	psRNATarget