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BaseInfo

ncRNA ID novel_zma_miR9971
Species Zea mays
Class miRNA
Genome position Chr3:18635298-18635383 [-]
Reference genome RefGen_v4
Source SRR5099742
Length 21
Mature sequence(if miRNA) 66 - UUCAAACUAUUGUGUUGGACU - 86
Stem-loop(if miRNA) -UUCAAAC        U       -U  -AU   CU    U  U
        UAUUGUGU GGACUAU  AU   GAU  CAAC CA U
        |||||||| |||||||  ||   |||  |||| ||
        GUAACGUA UCUGGUA  UA   CUA  GUUG GU G
GUGUGUUC        -       UC  GUU   CU    U  U
Stem-loop sequence UUCAAACUAUUGUGUUGGACUAUUAUAUGAUCUCAACUCAUUGUUGUGUUGUCAUCUUGAUCUAUGGUCUAUGCAAUGCUUGUGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY105194.1
ncRNA:21   UCAGGUUGUGUUAUCAAACUU   1
  **||=||||*|||||||||||
targets:482   CAUCUAACAAAAUAGUUUGAA   502

2.5 Zea mays PCO076640 mRNA sequence NA coding protein psRNATarget
XM_020546274.1
ncRNA:21   UCAGGUUGUGUUAUCAAACUU   1
  *|||*|*|||||||||||||=
targets:1761   UGUCAACCACAAUAGUUUGAG   1781

3.0 PREDICTED: Zea mays probable leucine-rich repeat receptor-like protein kinase At1g35710 (LOC109943344), mRNA NA coding protein psRNATarget