Search result

BaseInfo

ncRNA ID	novel_zma_miR9970
Species	Zea mays
Class	miRNA
Genome position	Chr3:30098365-30098449 [-]
Reference genome	RefGen_v4
Source	SRR5099742
Length	21
Mature sequence(if miRNA)	1 - UGUCCACCAAAUCAGCCCUUA - 21
Stem-loop(if miRNA)	--      A      A       G             -A AUG   AGGGCU GUUUGG GGACAGG AAUUGGAGGGGAU  C   G   |||||| |||||| ||||||| |||||||||||||  |   UCCCGA UAAACC CCUGUCC UUAACUUCCCCUA  G   A AU      C      A       A             CG AGG
Stem-loop sequence	AGGGCUAGUUUGGAGGACAGGGAAUUGGAGGGGAUACAUGGAGGAGGCAUCCCCUUCAAUUACCUGUCCACCAAAUCAGCCCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT034847.1	ncRNA:21   AUUCCCGACUAAACCACCUGU   1   |*|||||||||||||||||=| targets:729   UUAGGGCUGAUUUGGUGGAUA   749 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0022M13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137974.1	ncRNA:21   AUUCCCGACUAAACCACCUGU   1   |*|||||||||||||||||=| targets:729   UUAGGGCUGAUUUGGUGGAUA   749 Target Full Sequence	1.5	Zea mays 60S ribosomal protein L22-2 (LOC100192778), mRNA	NA	coding protein	psRNATarget
XM_020552919.1	ncRNA:21   AUUCCCGACUAAACCACCUGU   1   |*|||||||=||||||||||| targets:1497   UUAGGGCUGGUUUGGUGGACA   1517 Target Full Sequence	1.5	PREDICTED: Zea mays negative regulator of systemic acquired resistance SNI1 (LOC103654875), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020552918.1	ncRNA:21   AUUCCCGACUAAACCACCUGU   1   |*|||||||=||||||||||| targets:2150   UUAGGGCUGGUUUGGUGGACA   2170 Target Full Sequence	1.5	PREDICTED: Zea mays negative regulator of systemic acquired resistance SNI1 (LOC103654875), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645333.2	ncRNA:21   AUUCCCGACUAAACCACCUGU   1   |*|||||||=||||||||||* targets:1156   UCAGGGCUGGUUUGGUGGACC   1176 Target Full Sequence	2.5	PREDICTED: Zea mays putative MYB DNA-binding domain superfamily protein (MYBR100), transcript variant X15, mRNA	NA	coding protein	psRNATarget
BT037661.1	ncRNA:21   AUUCCCGACUAAACCACCUGU   1   |*|||||||=||||||||||* targets:1181   UCAGGGCUGGUUUGGUGGACC   1201 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0186F09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008645327.2	ncRNA:21   AUUCCCGACUAAACCACCUGU   1   |*|||||||=||||||||||* targets:1242   UCAGGGCUGGUUUGGUGGACC   1262 Target Full Sequence	2.5	PREDICTED: Zea mays putative MYB DNA-binding domain superfamily protein (MYBR100), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008645326.2	ncRNA:21   AUUCCCGACUAAACCACCUGU   1   |*|||||||=||||||||||* targets:1245   UCAGGGCUGGUUUGGUGGACC   1265 Target Full Sequence	2.5	PREDICTED: Zea mays putative MYB DNA-binding domain superfamily protein (MYBR100), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020553309.1	ncRNA:21   AUUCCCGACUAAACCACCUGU   1   |*|||||||=||||||||||* targets:1247   UCAGGGCUGGUUUGGUGGACC   1267 Target Full Sequence	2.5	PREDICTED: Zea mays putative MYB DNA-binding domain superfamily protein (MYBR100), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_008645330.2	ncRNA:21   AUUCCCGACUAAACCACCUGU   1   |*|||||||=||||||||||* targets:1250   UCAGGGCUGGUUUGGUGGACC   1270 Target Full Sequence	2.5	PREDICTED: Zea mays putative MYB DNA-binding domain superfamily protein (MYBR100), transcript variant X11, mRNA	NA	coding protein	psRNATarget
EU956129.1	ncRNA:21   AUUCCCGACUAAACCACCUGU   1   |*|||||||=||||||||||* targets:1240   UCAGGGCUGGUUUGGUGGACC   1260 Target Full Sequence	2.5	Zea mays clone 1557827 DNA binding protein mRNA, complete cds	NA	coding protein	psRNATarget
EU960880.1	ncRNA:21   AUUCCCGACUAAACCACCUGU   1   |*|||||||=||||||||||* targets:1742   UCAGGGCUGGUUUGGUGGACC   1762 Target Full Sequence	2.5	Zea mays clone 229329 mRNA sequence	NA	coding protein	psRNATarget
BT056027.1	ncRNA:21   AUUCCCGACUAAACCACCUGU   1   |*|||||||=||||||||||* targets:1773   UCAGGGCUGGUUUGGUGGACC   1793 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0147E16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153255.1	ncRNA:21   AUUCCCGACUAAACCACCUGU   1   |*|||||||=||||||||||* targets:1773   UCAGGGCUGGUUUGGUGGACC   1793 Target Full Sequence	2.5	Zea mays putative MYB DNA-binding domain superfamily protein (MYBR100), mRNA	NA	coding protein	psRNATarget
EU942647.1	ncRNA:21   AUUCCCGACUAAACCACCUGU   1   |*||*|||||||||||||||| targets:425   UUAGAGCUGAUUUGGUGGACA   445 Target Full Sequence	1.0	Zea mays clone 1526747 mRNA sequence	NA	coding protein	psRNATarget
JB163458.1	ncRNA:20   UUCCCGACUAAACCACCUGU   1   *||*|||||||||||||||| targets:1   UAGAGCUGAUUUGGUGGACA   20 Target Full Sequence	1.0	Sequence 1122 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235127.1	ncRNA:20   UUCCCGACUAAACCACCUGU   1   *||*|||||||||||||||| targets:1   UAGAGCUGAUUUGGUGGACA   20 Target Full Sequence	1.0	Sequence 1122 from Patent EP2985353	NA	coding protein	psRNATarget
HI402997.1	ncRNA:20   UUCCCGACUAAACCACCUGU   1   *||*|||||||||||||||| targets:1   UAGAGCUGAUUUGGUGGACA   20 Target Full Sequence	1.0	Sequence 1122 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020550470.1	ncRNA:21   AUUCCCGACUAAACCACCUGU   1   |=|*|||||||||||||*||| targets:3371   UGAUGGCUGAUUUGGUGAACA   3391 Target Full Sequence	2.5	PREDICTED: Zea mays nucleic acid binding (LOC103651171), transcript variant X4, mRNA	NA	coding protein	psRNATarget