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BaseInfo

ncRNA ID	novel_zma_miR9969
Species	Zea mays
Class	miRNA
Genome position	Chr3:38891393-38891588 [-]
Reference genome	RefGen_v4
Source	SRR5099742
Length	24
Mature sequence(if miRNA)	173 - AUCCCCGUCGGCCAGAGCAAAGGC - 196
Stem-loop(if miRNA)	---A   CC                   -AACAA  AU   CU    CC       --  GA  AAA             C   G   UC C   CG    GU     UCC  GUCGGCCAGAGCAAAGGCC      GA  AAG  AAUC  CGUCGGC  CC  GC   GGCCGACGGGCGU AAU UAA  C CGU  GCCU  G     |||  |||||||||||||||||||      ||  |||  ||||  |||||||  ||  ||   ||||||||||||| ||| |||  | |||  ||||     AGG  CAGCCGGUCUCGUUUCCGG      CU  UUC  UUAG  GCAGCCG  GG  UG   UCGGCUGCCCGUA UUA AUU  G GCA  CGGG  U AUUG   -A                   CUACCC  AU   AU    -A       AU  -A  --G             A   -   GA A   AU    AC
Stem-loop sequence	AUCCCCGUCGGCCAGAGCAAAGGCCAACAAGAAUAAGCUAAUCCCCGUCGGCCCGAGCAAAGGCCGACGGGCGUCAAUGUAAUCCCCGUCGGCCUGUGUCAGGGCUAACGAGAGUUAAUUAAUGCCCGUCGGCUGGUAGGUAGCCGACGAGAUUUACUUUAUCCCCAUCGGCCUUUGCUCUGGCCGACAGGAGUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008655791.1	ncRNA:24   CGGAAACGAGACCGGCUGCCCCUA   1   |||||||||||||||||=|||||| targets:25   GCCUUUGCUCUGGCCGAUGGGGAU   48 Target Full Sequence	1.5	PREDICTED: Zea mays formin-like protein 5 (LOC103634209), mRNA	NA	coding protein	psRNATarget
XM_008682560.2	ncRNA:24   CGGAAACGAGACCGGCUGCCCCUA   1   ||||*||||||||||||||||||| targets:25   GCCUAUGCUCUGGCCGACGGGGAU   48 Target Full Sequence	0.0	PREDICTED: Zea mays submaxillary gland androgen-regulated protein 3A-like (LOC103655885), mRNA	NA	coding protein	psRNATarget
XM_008655952.2	ncRNA:24   CGGA-----AACGAGACCGGCUGCCCCUA   1   ||||-----||||||*||||||||||||* targets:1261   GCCUCUGUAUUGCUCAGGCCGACGGGGAC   1289 Target Full Sequence	2.0	PREDICTED: Zea mays probable protein phosphatase 2C 31 (LOC103634426), mRNA	NA	coding protein	psRNATarget