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BaseInfo

ncRNA ID	novel_zma_miR9962
Species	Zea mays
Class	miRNA
Genome position	Chr10:38407965-38408089 [-]
Reference genome	RefGen_v4
Source	SRR5099742
Length	24
Mature sequence(if miRNA)	102 - UAGAGCUGAUUUGGUGACCCGGGA - 125
Stem-loop(if miRNA)	--U  A              -CC      C                A              UA    AG GCUGAUUUGGUGAC   GGGAUC CGGGAGGAUUGGAGGG AUUGAGGGGGAAAU  G    || ||||||||||||||   |||||| |||||||||||||||| ||||||||||||||    UC CGACUAAACCACUG   CCCUAG GCCCUCCUAACUUCCC UAACUCCCCCUUUA  U GAU  C              UUC      U                C              CU
Stem-loop sequence	UAGAGCUGAUUUGGUGACCCGGGAUCCCGGGAGGAUUGGAGGGAAUUGAGGGGGAAAUUAGUUCAUUUCCCCCUCAAUCCCCUUCAAUCCUCCCGUGAUCCCCUUGUCACCAAAUCAGCCCUUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163816.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*||||||||||||||||||| targets:61   UCCCUGGUCACCAAAUCAGCUCUA   84 Target Full Sequence	0.0	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*||||||||||||||||||| targets:61   UCCCUGGUCACCAAAUCAGCUCUA   84 Target Full Sequence	0.0	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
HI403355.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*||||||||||||||||||| targets:61   UCCCUGGUCACCAAAUCAGCUCUA   84 Target Full Sequence	0.0	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235532.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*||||||||||||||||||| targets:96   UCCCUGGUCACCAAAUCAGCUCUA   119 Target Full Sequence	0.0	Sequence 1527 from Patent EP2985353	NA	coding protein	psRNATarget
HI403402.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*||||||||||||||||||| targets:96   UCCCUGGUCACCAAAUCAGCUCUA   119 Target Full Sequence	0.0	Sequence 1527 from Patent EP2074227	NA	coding protein	psRNATarget
JB163696.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*||||||||||||||||||| targets:96   UCCCUGGUCACCAAAUCAGCUCUA   119 Target Full Sequence	0.0	Sequence 1360 from Patent EP2559767	NA	coding protein	psRNATarget
JB163863.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*||||||||||||||||||| targets:96   UCCCUGGUCACCAAAUCAGCUCUA   119 Target Full Sequence	0.0	Sequence 1527 from Patent EP2559767	NA	coding protein	psRNATarget
HI403235.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*||||||||||||||||||| targets:96   UCCCUGGUCACCAAAUCAGCUCUA   119 Target Full Sequence	0.0	Sequence 1360 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235365.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*||||||||||||||||||| targets:96   UCCCUGGUCACCAAAUCAGCUCUA   119 Target Full Sequence	0.0	Sequence 1360 from Patent EP2985353	NA	coding protein	psRNATarget
EU950017.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||||||||||||||||||*||| targets:513   UCCCGGGUCACCAAAUCAGCCCUA   536 Target Full Sequence	1.5	Zea mays clone 457681 mRNA sequence	NA	coding protein	psRNATarget
EU967725.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*||||||||||||||||||| targets:1133   UCCCCGGUCACCAAAUCAGCUCUA   1156 Target Full Sequence	0.0	Zea mays clone 305590 mRNA sequence	NA	coding protein	psRNATarget
XM_020540504.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||||||||||||||||||*||| targets:1878   UCCCGGGUCACCAAAUCAGCCCUA   1901 Target Full Sequence	1.5	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540503.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||||||||||||||||||*||| targets:2316   UCCCGGGUCACCAAAUCAGCCCUA   2339 Target Full Sequence	1.5	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001352049.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*|||||=||||||||||||| targets:580   UCCCUGGUCAUCAAAUCAGCUCUA   603 Target Full Sequence	1.0	Zea mays uncharacterized LOC100284194 (pco105859), transcript variant 2, mRNA	NA	coding protein	psRNATarget
XM_020547779.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*|||||=||||||||||||| targets:608   UCCCUGGUCAUCAAAUCAGCUCUA   631 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547780.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*|||||=||||||||||||| targets:610   UCCCUGGUCAUCAAAUCAGCUCUA   633 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X2, mRNA	NA	coding protein	psRNATarget
HI403301.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*|||||||||||||||*||| targets:97   UCCCUGGUCACCAAAUCAGCCCUA   120 Target Full Sequence	1.5	Sequence 1426 from Patent EP2074227	NA	coding protein	psRNATarget
JB163762.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*|||||||||||||||*||| targets:97   UCCCUGGUCACCAAAUCAGCCCUA   120 Target Full Sequence	1.5	Sequence 1426 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235431.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*|||||||||||||||*||| targets:97   UCCCUGGUCACCAAAUCAGCCCUA   120 Target Full Sequence	1.5	Sequence 1426 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008662311.2	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*|||||||||||=||||||* targets:1094   UCCCCGGUCACCAAAUUAGCUCUU   1117 Target Full Sequence	2.5	PREDICTED: Zea mays EPIDERMAL PATTERNING FACTOR-like protein 4 (LOC103639579), mRNA	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   |||||**||||||||||||||||| targets:1494   UCCCGAAUCACCAAAUCAGCUCUA   1517 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008671854.2	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*|||||||||||||||*||| targets:71   UCCCCGGUCACCAAAUCAGCCCUA   94 Target Full Sequence	1.5	PREDICTED: Zea mays alpha-glucosidase 2 (LOC103647311), transcript variant X2, mRNA	NA	coding protein	psRNATarget
HI403493.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*|||||||||||||*||||= targets:63   UCCCUGGUCACCAAAUCAACUCUG   86 Target Full Sequence	2.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*|||||||||||||*||||= targets:63   UCCCUGGUCACCAAAUCAACUCUG   86 Target Full Sequence	2.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*|||||||||||||*||||= targets:63   UCCCUGGUCACCAAAUCAACUCUG   86 Target Full Sequence	2.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235575.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*|||||||||||||||*||* targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85 Target Full Sequence	2.5	Sequence 1570 from Patent EP2985353	NA	coding protein	psRNATarget
HI403445.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*|||||||||||||||*||* targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85 Target Full Sequence	2.5	Sequence 1570 from Patent EP2074227	NA	coding protein	psRNATarget
JB163906.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||||*|||||||||||||||*||* targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85 Target Full Sequence	2.5	Sequence 1570 from Patent EP2559767	NA	coding protein	psRNATarget
EU974244.1	ncRNA:24   AGGGCCCAGUGGUUUAGUCGAGAU   1   ||*|*|||||||||||||||*||* targets:491   UCACCGGUCACCAAAUCAGCCCUU   514 Target Full Sequence	2.5	Zea mays clone 443590 SAUR1 - auxin-responsive SAUR family member mRNA, complete cds	NA	coding protein	psRNATarget