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BaseInfo

ncRNA ID	novel_zma_miR9952
Species	Zea mays
Class	miRNA
Genome position	Chr3:29426930-29426984 [+]
Reference genome	RefGen_v4
Source	SRR5099742;SRR5100248
Length	21
Mature sequence(if miRNA)	1 - AUUUCCAUUUUCCCAAGUGAA - 21
Stem-loop(if miRNA)	--             C   U    UUA   AUUUCCAUUUUCC AAG GAAA   G   ||||||||||||| ||| ||||   U   UAAGGGUAAAAGG UUC CUUU   U CC             A   C    UAC
Stem-loop sequence	AUUUCCAUUUUCCCAAGUGAAAUUAGUUCAUUUUCCCUUAGGAAAAUGGGAAUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406466.1	ncRNA:21   AAGUGAACCCUUUUACCUUUA   1   |||*||||||||||||*|||| targets:65   UUCCCUUGGGAAAAUGAAAAU   85 Target Full Sequence	2.5	Sequence 4591 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238596.1	ncRNA:21   AAGUGAACCCUUUUACCUUUA   1   |||*||||||||||||*|||| targets:65   UUCCCUUGGGAAAAUGAAAAU   85 Target Full Sequence	2.5	Sequence 4591 from Patent EP2985353	NA	coding protein	psRNATarget
JB166927.1	ncRNA:21   AAGUGAACCCUUUUACCUUUA   1   |||*||||||||||||*|||| targets:65   UUCCCUUGGGAAAAUGAAAAU   85 Target Full Sequence	2.5	Sequence 4591 from Patent EP2559767	NA	coding protein	psRNATarget
EU950348.1	ncRNA:21   AAGUGAACCCUUUUACCUUUA   1   |||*||||||||||||*|||| targets:941   UUCUCUUGGGAAAAUGAAAAU   961 Target Full Sequence	2.5	Zea mays clone 489779 mRNA sequence	NA	coding protein	psRNATarget
XM_020544943.1	ncRNA:21   AAGUGAACCCUUUUACCUUUA   1   |||*||||||||||||*|||| targets:1441   UUCCCUUGGGAAAAUGAAAAU   1461 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020544942.1	ncRNA:21   AAGUGAACCCUUUUACCUUUA   1   |||*||||||||||||*|||| targets:1484   UUCCCUUGGGAAAAUGAAAAU   1504 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020544940.1	ncRNA:21   AAGUGAACCCUUUUACCUUUA   1   |||*||||||||||||*|||| targets:1485   UUCCCUUGGGAAAAUGAAAAU   1505 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544939.1	ncRNA:21   AAGUGAACCCUUUUACCUUUA   1   |||*||||||||||||*|||| targets:1528   UUCCCUUGGGAAAAUGAAAAU   1548 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544941.1	ncRNA:21   AAGUGAACCCUUUUACCUUUA   1   |||*||||||||||||*|||| targets:1614   UUCCCUUGGGAAAAUGAAAAU   1634 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU957492.1	ncRNA:21   AAGUGAACCCUUUUACCUUUA   1   |||*|||||||||||*||||| targets:1749   UUCCCUUGGGAAAAUAGAAAU   1769 Target Full Sequence	2.5	Zea mays clone 1594874 mRNA sequence	NA	coding protein	psRNATarget
XM_008675357.2	ncRNA:21   AAGUGAACCCUUUUACCUUUA   1   |||*||||||||||||*|||| targets:175   UUCCCUUGGGAAAAUGAAAAU   195 Target Full Sequence	2.5	PREDICTED: Zea mays UNE1 (LOC103649618), mRNA	NA	coding protein	psRNATarget
AY105446.1	ncRNA:21   AAGUGAACCCUUUUACCUUUA   1   **||*|||||||=|||||||| targets:226   GACAAUUGGGAAGAUGGAAAU   246 Target Full Sequence	2.5	Zea mays PCO143449 mRNA sequence	NA	coding protein	psRNATarget
DQ246165.1	ncRNA:21   AAGUGAACCCUUUUACCUUUA   1   **||*|||||||=|||||||| targets:37   GACAAUUGGGAAGAUGGAAAU   57 Target Full Sequence	2.5	Zea mays clone 10046 mRNA sequence	NA	coding protein	psRNATarget
EU947304.1	ncRNA:21   AAGUGAACCCUUUUACCUUUA   1   **||*|||||||=|||||||| targets:317   GACAAUUGGGAAGAUGGAAAU   337 Target Full Sequence	2.5	Zea mays clone 337987 mRNA sequence	NA	coding protein	psRNATarget
XM_008660913.2	ncRNA:21   AAGUGAACCCUUUUACCUUUA   1   **||*|||||||=|||||||| targets:2745   GACAAUUGGGAAGAUGGAAAU   2765 Target Full Sequence	2.5	PREDICTED: Zea mays putative transcription elongation factor SPT5 homolog 1 (LOC103637903), mRNA	NA	coding protein	psRNATarget