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BaseInfo

ncRNA ID	novel_zma_miR9950
Species	Zea mays
Class	miRNA
Genome position	Chr10:27160617-27160768 [+]
Reference genome	RefGen_v4
Source	SRR5099742
Length	25
Mature sequence(if miRNA)	1 - UUCCAUGCUCUACUCUGGUCCGAGA - 25
Stem-loop(if miRNA)	--                                      U     C                CAG     UC   CU   UUCCAUGCUCUACUCUGGUCCGAGAUAGAGUUUCGGCG CACCU CCUGUUGUUCUCCGGA   UACAC  UCC  G   |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||   |||||  |||   AAGGUACGAGAUGAGGCUAGGCUCUAUUUUAAAGCCGU GUGGA GGGCGACAAGAGGCCU   AUGUG  AGG  U CA                                      C     U                ---     -C   AC
Stem-loop sequence	UUCCAUGCUCUACUCUGGUCCGAGAUAGAGUUUCGGCGUCACCUCCCUGUUGUUCUCCGGACAGUACACUCUCCCUGUCAGGACGUGUAUCCGGAGAACAGCGGGUAGGUGCUGCCGAAAUUUUAUCUCGGAUCGGAGUAGAGCAUGGAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008672589.2	ncRNA:25   AGAGC--CUGGUCUCAUCUCGUACCUU   1   *||=|--|||||||||=|||||||||= targets:1387   ACUUGACGACCAGAGUGGAGCAUGGAG   1413 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648084 (LOC103648084), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020548683.1	ncRNA:25   AGAGC--CUGGUCUCAUCUCGUACCUU   1   *||=|--|||||||||=|||||||||= targets:1448   ACUUGACGACCAGAGUGGAGCAUGGAG   1474 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648084 (LOC103648084), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008672590.2	ncRNA:25   AGAGC--CUGGUCUCAUCUCGUACCUU   1   *||=|--|||||||||=|||||||||= targets:1377   ACUUGACGACCAGAGUGGAGCAUGGAG   1403 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648085 (LOC103648085), transcript variant X1, mRNA	NA	coding protein	psRNATarget