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BaseInfo

ncRNA ID	novel_zma_miR9949
Species	Zea mays
Class	miRNA
Genome position	Chr3:181960863-181961059 [-]
Reference genome	RefGen_v4
Source	SRR5099742
Length	22
Mature sequence(if miRNA)	176 - AUAUCAUAUGUAGAGGCUGUGG - 197
Stem-loop(if miRNA)	--                            U                 A                            AAG   ACUA     -     CA   AUAUCAUAUGUAGAGGCUGUGGUAAAAA UUUAGAAUGUUUGGAGA AGUUGUGAGACACUAUGUGUAGAAACCU   AGG    CACAU GAAAU  U   |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||   |||    ||||| |||||   UAUAGUAUACAUCUCCGACACUAUUUUU AAAUCUUACAAACCUCU UCAACACUCUGUGAUACACAUCUUUGGA   UCU    GUGUA CUUUG  A AC                            U                 A                            AGA   --AA     A     AG
Stem-loop sequence	AUAUCAUAUGUAGAGGCUGUGGUAAAAAUUUUAGAAUGUUUGGAGAAAGUUGUGAGACACUAUGUGUAGAAACCUAAGAGGACUACACAUGAAAUCAUAGAGUUUCAAUGUGAAUCUAGAAGGUUUCUACACAUAGUGUCUCACAACUAUCUCCAAACAUUCUAAAUUUUUUAUCACAGCCUCUACAUAUGAUAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163670.1	ncRNA:22   GGUGUCGGAGAUGUAUACUAUA   1   =||||||||||||||||||||| targets:203   UCACAGCCUCUACAUAUGAUAU   224 Target Full Sequence	0.0	Sequence 1334 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235339.1	ncRNA:22   GGUGUCGGAGAUGUAUACUAUA   1   =||||||||||||||||||||| targets:203   UCACAGCCUCUACAUAUGAUAU   224 Target Full Sequence	0.0	Sequence 1334 from Patent EP2985353	NA	coding protein	psRNATarget
HI403209.1	ncRNA:22   GGUGUCGGAGAUGUAUACUAUA   1   =||||||||||||||||||||| targets:203   UCACAGCCUCUACAUAUGAUAU   224 Target Full Sequence	0.0	Sequence 1334 from Patent EP2074227	NA	coding protein	psRNATarget
EZ089840.1	ncRNA:20   UGUCGGAGAUGUAUACUAUA   1   |||||||||||||||||||| targets:1   ACAGCCUCUACAUAUGAUAU   20 Target Full Sequence	0.0	TSA: Zea mays contig25486, mRNA sequence	NA	coding protein	psRNATarget
HI403222.1	ncRNA:22   GGUGUCGGAGAUGUAUACUAUA   1   =||||*||||||=||||||||| targets:197   UCACAACCUCUAUAUAUGAUAU   218 Target Full Sequence	2.5	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
JB163683.1	ncRNA:22   GGUGUCGGAGAUGUAUACUAUA   1   =||||*||||||=||||||||| targets:197   UCACAACCUCUAUAUAUGAUAU   218 Target Full Sequence	2.5	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:22   GGUGUCGGAGAUGUAUACUAUA   1   =||||*||||||=||||||||| targets:197   UCACAACCUCUAUAUAUGAUAU   218 Target Full Sequence	2.5	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235350.1	ncRNA:22   GGUGUCGGAGAUGUAUACUAUA   1   =||||*|||*|||||||||||| targets:197   UCACAACCUGUACAUAUGAUAU   218 Target Full Sequence	2.5	Sequence 1345 from Patent EP2985353	NA	coding protein	psRNATarget
HI403220.1	ncRNA:22   GGUGUCGGAGAUGUAUACUAUA   1   =||||*|||*|||||||||||| targets:197   UCACAACCUGUACAUAUGAUAU   218 Target Full Sequence	2.5	Sequence 1345 from Patent EP2074227	NA	coding protein	psRNATarget
JB163681.1	ncRNA:22   GGUGUCGGAGAUGUAUACUAUA   1   =||||*|||*|||||||||||| targets:197   UCACAACCUGUACAUAUGAUAU   218 Target Full Sequence	2.5	Sequence 1345 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020546111.1	ncRNA:22   GGUGUCGGAGAUGUAUACUAUA   1   =|==||=|*||||||||||||| targets:4022   UCGUAGUCGCUACAUAUGAUAU   4043 Target Full Sequence	3.0	PREDICTED: Zea mays receptor-like protein 12 (LOC103642583), mRNA	NA	coding protein	psRNATarget