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BaseInfo

ncRNA ID novel_zma_miR9939
Species Zea mays
Class miRNA
Genome position Chr3:222426513-222426686 [-]
Reference genome RefGen_v4
Source SRR5099742
Length 21
Mature sequence(if miRNA) 154 - UUUGAUUUCUAGGGACUUAUU - 174
Stem-loop(if miRNA) --    A        G   U      UC      U          AUAUUUUA      A   GAUA                    A    
  UUUG UUUCUAGG ACU AUUUUU  AGUCUC UCAUUUUAUU        UAUUUU GUC    AAUUGCCAAAUACGGAAAUU AAAUU
  |||| |||||||| ||| ||||||  |||||| ||||||||||        |||||| |||    |||||||||||||||||||| ||||A
  AAAC AAAGAUCC UGA UAAAAA  UCAGGG AGUAAAAUAA        GUAAAA CAG    UUAACGGUUUAUGUUUUUGA UUUGU
AC    C        A   U      --      U          -------G      A   --AG                    A    
Stem-loop sequence UUUGAUUUCUAGGGACUUAUUUUUUCAGUCUCUUCAUUUUAUUAUAUUUUAUAUUUUAGUCGAUAAAUUGCCAAAUACGGAAAUUAAAAUUAUGUUUAAGUUUUUGUAUUUGGCAAUUGAGACAAAAAUGGAAUAAAAUGAUGGGACUAAAAAUUAGUACCUAGAAACCAAACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020548275.1
ncRNA:21   UUAUUCAGGGAUCUUUAGUUU   1
  |||*||||||||||||*||||
targets:2161   AAUUAGUCCCUAGAAACCAAA   2181

2.5 PREDICTED: Zea mays putative pentatricopeptide repeat-containing protein At1g09680 (LOC103648586), transcript variant X1, mRNA NA coding protein psRNATarget
BT053999.2
ncRNA:21   UUAUUCAGGGAUCUUUAGUUU   1
  |||*||||||||||||*||||
targets:2081   AAUUAGUCCCUAGAAACCAAA   2101

2.5 Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds NA coding protein psRNATarget
NM_001152323.1
ncRNA:21   UUAUUCAGGGAUCUUUAGUUU   1
  |||*||||||||||||*||||
targets:2081   AAUUAGUCCCUAGAAACCAAA   2101

2.5 Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA NA coding protein psRNATarget
EU967664.1
ncRNA:21   UUAUUCAGGGAUCUUUAGUUU   1
  |||*||||||||||||*||||
targets:1245   AAUUAGUCCCUAGAAACCAAA   1265

2.5 Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds NA coding protein psRNATarget
NM_001112602.2
ncRNA:21   UUAUUCAGGGAUCUUUAGUUU   1
  |||*||||||||||||*||||
targets:1245   AAUUAGUCCCUAGAAACCAAA   1265

2.5 Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA NA coding protein psRNATarget
BT065747.2
ncRNA:21   UUAUUCAGGGAUCUUUAGUUU   1
  |||*||||||||||||*||||
targets:911   AAUUAGUCCCUAGAAACCAAA   931

2.5 Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds NA coding protein psRNATarget
XM_008674147.2
ncRNA:21   UUAUUCAGGGAUCUUUAGUUU   1
  *||*||||||||||||*||||
targets:24   CAUUAGUCCCUAGAAACCAAA   44

2.5 PREDICTED: Zea mays uncharacterized LOC100272682 (TIDP2766), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020546554.1
ncRNA:21   UUAUUCAGGGAUCUUUAGUUU   1
  *||*||||||||||||*||||
targets:35   CAUUAGUCCCUAGAAACCAAA   55

2.5 PREDICTED: Zea mays uncharacterized LOC109943471 (LOC109943471), mRNA NA coding protein psRNATarget
NM_001156492.1
ncRNA:21   UUAUUCAGGGAUCUUUAGUUU   1
  *||*||||||||||||*||||
targets:1311   CAUUAGUCCCUAGAAACCAAA   1331

2.5 Zea mays protein COQ10 A (LOC100283591), mRNA NA coding protein psRNATarget
EU965238.1
ncRNA:21   UUAUUCAGGGAUCUUUAGUUU   1
  *||*||||||||||||*||||
targets:1311   CAUUAGUCCCUAGAAACCAAA   1331

2.5 Zea mays clone 284715 protein COQ10 A mRNA, complete cds NA coding protein psRNATarget
LQ235125.1
ncRNA:21   UUAUUCAGGGAUCUUUAGUUU   1
  *||*||||||||||||*||||
targets:151   CAUUAGUCCCUAGAAACCAAA   171

2.5 Sequence 1120 from Patent EP2985353 NA coding protein psRNATarget
HI402995.1
ncRNA:21   UUAUUCAGGGAUCUUUAGUUU   1
  *||*||||||||||||*||||
targets:151   CAUUAGUCCCUAGAAACCAAA   171

2.5 Sequence 1120 from Patent EP2074227 NA coding protein psRNATarget
JB163456.1
ncRNA:21   UUAUUCAGGGAUCUUUAGUUU   1
  *||*||||||||||||*||||
targets:151   CAUUAGUCCCUAGAAACCAAA   171

2.5 Sequence 1120 from Patent EP2559767 NA coding protein psRNATarget
LQ235182.1
ncRNA:21   UUAUUCAGGGAUCUUUAGUUU   1
  *||*||||||||||||*||||
targets:149   CAUUAGUCCCUAGAAACCAAA   169

2.5 Sequence 1177 from Patent EP2985353 NA coding protein psRNATarget
HI403044.1
ncRNA:21   UUAUUCAGGGAUCUUUAGUUU   1
  *||*||||||||||||*||||
targets:149   CAUUAGUCCCUAGAAACCAAA   169

2.5 Sequence 1169 from Patent EP2074227 NA coding protein psRNATarget
HI403052.1
ncRNA:21   UUAUUCAGGGAUCUUUAGUUU   1
  *||*||||||||||||*||||
targets:149   CAUUAGUCCCUAGAAACCAAA   169

2.5 Sequence 1177 from Patent EP2074227 NA coding protein psRNATarget
JB163505.1
ncRNA:21   UUAUUCAGGGAUCUUUAGUUU   1
  *||*||||||||||||*||||
targets:149   CAUUAGUCCCUAGAAACCAAA   169

2.5 Sequence 1169 from Patent EP2559767 NA coding protein psRNATarget
JB163513.1
ncRNA:21   UUAUUCAGGGAUCUUUAGUUU   1
  *||*||||||||||||*||||
targets:149   CAUUAGUCCCUAGAAACCAAA   169

2.5 Sequence 1177 from Patent EP2559767 NA coding protein psRNATarget
LQ235174.1
ncRNA:21   UUAUUCAGGGAUCUUUAGUUU   1
  *||*||||||||||||*||||
targets:149   CAUUAGUCCCUAGAAACCAAA   169

2.5 Sequence 1169 from Patent EP2985353 NA coding protein psRNATarget
JB163455.1
ncRNA:21   UUAUUCAGGGAUCUUUAGUUU   1
  *||*||||||||||||*||||
targets:148   CAUUAGUCCCUAGAAACCAAA   168

2.5 Sequence 1119 from Patent EP2559767 NA coding protein psRNATarget
LQ235124.1
ncRNA:21   UUAUUCAGGGAUCUUUAGUUU   1
  *||*||||||||||||*||||
targets:148   CAUUAGUCCCUAGAAACCAAA   168

2.5 Sequence 1119 from Patent EP2985353 NA coding protein psRNATarget
HI402994.1
ncRNA:21   UUAUUCAGGGAUCUUUAGUUU   1
  *||*||||||||||||*||||
targets:148   CAUUAGUCCCUAGAAACCAAA   168

2.5 Sequence 1119 from Patent EP2074227 NA coding protein psRNATarget
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