Search result

BaseInfo

ncRNA ID	novel_zma_miR9929
Species	Zea mays
Class	miRNA
Genome position	Chr5:52417909-52417990 [-]
Reference genome	RefGen_v4
Source	SRR4237227
Length	24
Mature sequence(if miRNA)	1 - AAAUACAACACUCGACAAAGAGCU - 24
Stem-loop(if miRNA)	--                U     U   C           A   CUCUUUGUCGAGUGUU UAUUU UGA ACUCGGCAAAG G   |||||||||||||||| ||||| ||| |||||||||||   GAGAAACAGCUCACAA AUAAA ACU UGAGCCGUUUC C UC                C     C   A           U
Stem-loop sequence	CUCUUUGUCGAGUGUUUUAUUUUUGACACUCGGCAAAGAGCUCUUUGCCGAGUAUCACAAAUACAACACUCGACAAAGAGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001152461.1	ncRNA:24   UCGAGAAACAGCUCACAACAUAAA   1   |||||||||*|||||||||||||| targets:1986   AGCUCUUUGCCGAGUGUUGUAUUU   2009 Target Full Sequence	1.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   UCGAGAAACAGCUCACAACAUAAA   1   |||||||||*|||||||||||||| targets:1986   AGCUCUUUGCCGAGUGUUGUAUUU   2009 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
EZ092680.1	ncRNA:24   UC-GAGAAACAGCUCACAACAUAAA   1   ||-|*||||||=||||*|||||||| targets:20   AGACGCUUUGUUGAGUAUUGUAUUU   44 Target Full Sequence	2.5	TSA: Zea mays contig28329, mRNA sequence	NA	coding protein	psRNATarget
BT061565.1	ncRNA:24   UC-GAGAAACAGCUCACAACAUAAA   1   ||-|*||||||=||||*|||||||| targets:541   AGACGCUUUGUUGAGUAUUGUAUUU   565 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0158M17 mRNA, complete cds	NA	coding protein	psRNATarget
EU975617.1	ncRNA:24   UC-GAGAAACAGCUCACAACAUAAA   1   ||-|*||||||=||||*|||||||| targets:968   AGACGCUUUGUUGAGUAUUGUAUUU   992 Target Full Sequence	2.5	Zea mays clone 494392 xylosyltransferase 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158989.1	ncRNA:24   UC-GAGAAACAGCUCACAACAUAAA   1   ||-|*||||||=||||*|||||||| targets:968   AGACGCUUUGUUGAGUAUUGUAUUU   992 Target Full Sequence	2.5	Zea mays xylosyltransferase 1 (LOC100286101), mRNA	NA	coding protein	psRNATarget
XM_008656909.2	ncRNA:24   UC-GAGAAACAGCUCACAACAUAAA   1   ||-|*||||||=||||*|||||||| targets:1036   AGACGCUUUGUUGAGUAUUGUAUUU   1060 Target Full Sequence	2.5	PREDICTED: Zea mays xylosyltransferase 1 (LOC100286101), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT060736.1	ncRNA:24   UCGAGAAACAGCUCACAACAUAAA   1   **=|=|||*|||||||||*||||| targets:1052   UUUUUUUUUUCGAGUGUUUUAUUU   1075 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0040O21 mRNA, complete cds	NA	coding protein	psRNATarget