Search result

BaseInfo

ncRNA ID	novel_zma_miR9921
Species	Zea mays
Class	miRNA
Genome position	Chr4:138228344-138228424 [+]
Reference genome	RefGen_v4
Source	SRR4237227
Length	21
Mature sequence(if miRNA)	1 - CGUACCUCGGCGCCGUAGAUC - 21
Stem-loop(if miRNA)	--          C              C      GU   C   CGUACCUCGG GCCGUAGAUCUUGG GCCGAG  CGG G   |||||||||| |||||||||||||| ||||||  ||| C   GCAUGGAGCC CGGUAUCUAGAACC CGGCUC  GUU C GU          A              A      UU   A
Stem-loop sequence	CGUACCUCGGCGCCGUAGAUCUUGGCGCCGAGGUCGGCGCCAUUGUUCUCGGCACCAAGAUCUAUGGCACCGAGGUACGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008664820.2	ncRNA:21   CUAGAUGCCGCGGCUCCAUGC   1   ||||||=|||||||||||||| targets:27   GAUCUAUGGCGCCGAGGUACG   47 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103641469 (LOC103641469), mRNA	NA	coding protein	psRNATarget
XM_020544295.1	ncRNA:21   CUAGAUGCCGCGGCUCCAUGC   1   ||||||=|||||||||||||| targets:72   GAUCUAUGGCGCCGAGGUACG   92 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA	NA	coding protein	psRNATarget
XM_020548134.1	ncRNA:21   CUAGAUGCCGCGGCUCCAUGC   1   ||||||=|||||||||||||| targets:49   GAUCUAUGGCGCCGAGGUACG   69 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109943956 (LOC109943956), mRNA	NA	coding protein	psRNATarget
XM_008666282.2	ncRNA:21   CUAGAUGCCGCGGCUCCAUGC   1   ||||||=|||||||||||||| targets:229   GAUCUAUGGCGCCGAGGUACG   249 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA	NA	coding protein	psRNATarget
XM_020545943.1	ncRNA:21   CUAGAUGCCGCGGCUCCAUGC   1   ||||||=|||||||||||||| targets:229   GAUCUAUGGCGCCGAGGUACG   249 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA	NA	coding protein	psRNATarget
XM_020545942.1	ncRNA:21   CUAGAUGCCGCGGCUCCAUGC   1   ||||||=|||||||||||||| targets:229   GAUCUAUGGCGCCGAGGUACG   249 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA	NA	coding protein	psRNATarget
XM_008652363.2	ncRNA:21   CUAGAUGCCGCGGCUCCAUGC   1   ||||||=|||||||||||||| targets:233   GAUCUAUGGCGCCGAGGUACG   253 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA	NA	coding protein	psRNATarget
XM_020541347.1	ncRNA:21   CUAGAUGCCGCGGCUCCAUGC   1   ||||||=|||||||||||||| targets:233   GAUCUAUGGCGCCGAGGUACG   253 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA	NA	coding protein	psRNATarget
XM_020537732.1	ncRNA:21   CUAGAUGCCGCGGCUCCAUGC   1   ||||||=|||||||||||||| targets:298   GAUCUAUGGCGCCGAGGUACG   318 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA	NA	coding protein	psRNATarget
XM_008654703.2	ncRNA:21   CUAGAUGCCGCGGCUCCAUGC   1   ||||||=|||||||||||||| targets:1005   GAUCUAUGGCGCCGAGGUACG   1025 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA	NA	coding protein	psRNATarget
XM_008666873.2	ncRNA:21   CUAGAUGCCGCGGCUCCAUGC   1   |*||||||||||||||||=|* targets:771   GUUCUACGGCGCCGAGGUGCU   791 Target Full Sequence	2.5	PREDICTED: Zea mays protein kinase PINOID (LOC103643693), mRNA	NA	coding protein	psRNATarget