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BaseInfo

ncRNA ID novel_zma_miR9907
Species Zea mays
Class miRNA
Genome position Chr3:131072752-131072813 [+]
Reference genome RefGen_v4
Source SRR4237227
Length 24
Mature sequence(if miRNA) 39 - ACUCGACAAAGAACUCUUUACCGA - 62
Stem-loop(if miRNA) --  C      AC       C          A
  GG AAAGAG  UUCUUUG CGAGUGCCAA U
  || ||||||  ||||||| ||||||||||
  CC UUUCUC  AAGAAAC GCUCACGGUU A
AG  A      --       A          U
Stem-loop sequence GGCAAAGAGACUUCUUUGCCGAGUGCCAAAUAUUUGGCACUCGACAAAGAACUCUUUACCGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU949560.1
ncRNA:24   AGCCAUUUCUCAAGAAACAGCUCA   1
  ||||*||||=||||||||*|||||
targets:582   UCGGCAAAGGGUUCUUUGCCGAGU   605

2.5 Zea mays clone 424771 mRNA sequence NA coding protein psRNATarget
XM_008672265.2
ncRNA:24   AGCCAUUUCU-CAAGAAACAGCUCA   1
  *|||*|||*|-||||||||||||||
targets:423   ACGGCAAAAAAGUUCUUUGUCGAGU   447

3.0 PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008672266.2
ncRNA:24   AGCCAUUUCU-CAAGAAACAGCUCA   1
  *|||*|||*|-||||||||||||||
targets:675   ACGGCAAAAAAGUUCUUUGUCGAGU   699

3.0 PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X2, mRNA NA coding protein psRNATarget