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BaseInfo

ncRNA ID	novel_zma_miR9898
Species	Zea mays
Class	miRNA
Genome position	Chr2:187671622-187671697 [+]
Reference genome	RefGen_v4
Source	SRR4237227
Length	24
Mature sequence(if miRNA)	53 - AUUCUAGCCCCCUCAAUCCCCUCU - 76
Stem-loop(if miRNA)	--   A          A          UC        A   AGG GAUUGAGGGG CUAGAAUCCC  ACUAUUUA A   ||| |||||||||| ||||||||||  ||||||||   UCC CUAACUCCCC GAUCUUAGGG  UGAUAAGU A UC   C          C          GA        U
Stem-loop sequence	AGGAGAUUGAGGGGACUAGAAUCCCUCACUAUUUAAAAUUGAAUAGUAGGGGAUUCUAGCCCCCUCAAUCCCCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001196723.1	ncRNA:24   UCUCCCCUAACUCCCCCGAUCUUA   1   =*|||||||||||||||||||||| targets:1160   GAAGGGGAUUGAGGGGGCUAGAAU   1183 Target Full Sequence	0.0	Zea mays uncharacterized LOC100502246 (LOC100502246), mRNA	NA	coding protein	psRNATarget
BT087519.1	ncRNA:24   UCUCCCCUAACUCCCCCGAUCUUA   1   =*|||||||||||||||||||||| targets:1160   GAAGGGGAUUGAGGGGGCUAGAAU   1183 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0100J09 mRNA, complete cds	NA	coding protein	psRNATarget
EZ054947.1	ncRNA:24   UCUCCCCUAACUCCCCCGAUCUUA   1   =||||||||||||||*|||||||| targets:14   GGAGGGGAUUGAGGGAGCUAGAAU   37 Target Full Sequence	1.5	TSA: Zea mays contig56069, mRNA sequence	NA	coding protein	psRNATarget
XM_020549567.1	ncRNA:24   UCUCCCCUAACUCCCCCGAUCUUA   1   =|||||||||||||*||||||||| targets:1008   GGAGGGGAUUGAGGAGGCUAGAAU   1031 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100273482), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020540546.1	ncRNA:24   UCUCCCCUAACUCCCCCGAUCUUA   1   =*|||||=|||||||||||||||| targets:1511   GAAGGGGGUUGAGGGGGCUAGAAU   1534 Target Full Sequence	1.0	PREDICTED: Zea mays 50S ribosomal protein L12-2 (LOC100283458), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ238199.1	ncRNA:24   UCUCCCCUAACUCCCCCGAUCUUA   1   =*|||||||||||||*|||||||| targets:28   GAAGGGGAUUGAGGGUGCUAGAAU   51 Target Full Sequence	1.5	Sequence 4194 from Patent EP2985353	NA	coding protein	psRNATarget
JB166530.1	ncRNA:24   UCUCCCCUAACUCCCCCGAUCUUA   1   =*|||||||||||||*|||||||| targets:28   GAAGGGGAUUGAGGGUGCUAGAAU   51 Target Full Sequence	1.5	Sequence 4194 from Patent EP2559767	NA	coding protein	psRNATarget
HI406069.1	ncRNA:24   UCUCCCCUAACUCCCCCGAUCUUA   1   =*|||||||||||||*|||||||| targets:28   GAAGGGGAUUGAGGGUGCUAGAAU   51 Target Full Sequence	1.5	Sequence 4194 from Patent EP2074227	NA	coding protein	psRNATarget
BT019066.1	ncRNA:24   UCUCCCCUAACUCCCCCGAUCUUA   1   ||||*||||||||||*|||||||| targets:72   AGAGAGGAUUGAGGGAGCUAGAAU   95 Target Full Sequence	1.5	Zea mays clone Contig620.F mRNA sequence	NA	coding protein	psRNATarget
EZ050474.1	ncRNA:24   UCUCCCCUAACUCCCCCGAUCUUA   1   =*||||||||||||||||||*||| targets:105   GAAGGGGAUUGAGGGGGCUAUAAU   128 Target Full Sequence	1.5	TSA: Zea mays contig51594, mRNA sequence	NA	coding protein	psRNATarget
BT036654.1	ncRNA:24   UCUCCCCUAACUCCCCCGAUCUUA   1   =*|||||||||||||*|||||||| targets:981   GAAGGGGAUUGAGGGUGCUAGAAU   1004 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0128D05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349849.1	ncRNA:24   UCUCCCCUAACUCCCCCGAUCUUA   1   =*|||||||||||||*|||||||| targets:814   GAAGGGGAUUGAGGGUGCUAGAAU   837 Target Full Sequence	1.5	Zea mays uncharacterized LOC100194187 (LOC100194187), mRNA	NA	coding protein	psRNATarget
EU952717.1	ncRNA:24   UCUCCCCUAACUCCCCCGAUCUUA   1   =*|||||||||||||*|||||||| targets:814   GAAGGGGAUUGAGGGUGCUAGAAU   837 Target Full Sequence	1.5	Zea mays clone 1287070 zinc finger protein mRNA, complete cds	NA	coding protein	psRNATarget
BT018904.1	ncRNA:24   UCUCCCCUAACUCCCCCGAUCUUA   1   **||||||||||*||||||||||| targets:1730   UAAGGGGAUUGAAGGGGCUAGAAU   1753 Target Full Sequence	1.5	Zea mays clone EL01T0208E01.d mRNA sequence	NA	coding protein	psRNATarget
AY109657.1	ncRNA:24   UCUCCCCUAACUCCCCCGAUCUUA   1   ||||*||||||||||*|||||||* targets:59   AGAGAGGAUUGAGGGAGCUAGAAC   82 Target Full Sequence	2.5	Zea mays CL30827_1 mRNA sequence	NA	coding protein	psRNATarget
AY109112.1	ncRNA:24   UCUCCCCUAACUCCCCCGAUCUUA   1   **||*|||||||*||||||||||| targets:896   UAAGUGGAUUGAAGGGGCUAGAAU   919 Target Full Sequence	1.5	Zea mays PCO134243 mRNA sequence	NA	coding protein	psRNATarget