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BaseInfo

ncRNA ID	novel_zma_miR9896
Species	Zea mays
Class	miRNA
Genome position	Chr2:180545085-180545204 [+]
Reference genome	RefGen_v4
Source	SRR4237227
Length	24
Mature sequence(if miRNA)	97 - AUAGUUAGCCACAAACCAAACAUG - 120
Stem-loop(if miRNA)	--         C  U U      -           GCACAACUUUUCC      C       C   A   UGUUUGGUU GU G CUAACU UGCCACACUUU             GCCUAA GUUAGUU UUC A   ||||||||| || | |||||| |||||||||||             |||||| ||||||| ||| U   ACAAACCAA CA C GAUUGA ACGGUGUGAAA             CGGAUU CAAUCAG AAG U GU         A  C -      U           -------------      C       C   U
Stem-loop sequence	UGUUUGGUUCGUUGUCUAACUUGCCACACUUUGCACAACUUUUCCGCCUAACGUUAGUUCUUCAAUUUGAACGACUAACCUUAGGCAAAGUGUGGCAUAGUUAGCCACAAACCAAACAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166948.1	ncRNA:24   GUACAAACCAAACACCGAUUGAUA   1   |||||||||||||||||||||||| targets:14   CAUGUUUGGUUUGUGGCUAACUAU   37 Target Full Sequence	0.0	Sequence 4612 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238617.1	ncRNA:24   GUACAAACCAAACACCGAUUGAUA   1   |||||||||||||||||||||||| targets:14   CAUGUUUGGUUUGUGGCUAACUAU   37 Target Full Sequence	0.0	Sequence 4612 from Patent EP2985353	NA	coding protein	psRNATarget
HI406487.1	ncRNA:24   GUACAAACCAAACACCGAUUGAUA   1   |||||||||||||||||||||||| targets:14   CAUGUUUGGUUUGUGGCUAACUAU   37 Target Full Sequence	0.0	Sequence 4612 from Patent EP2074227	NA	coding protein	psRNATarget
EZ090517.1	ncRNA:24   GUACAAACCAAACACCGAUUGAUA   1   =||||||||||||||||||||||| targets:63   UAUGUUUGGUUUGUGGCUAACUAU   86 Target Full Sequence	0.0	TSA: Zea mays contig26164, mRNA sequence	NA	coding protein	psRNATarget
EZ062806.1	ncRNA:24   GUACAAACCAAACACCGAUUGAUA   1   =||||||||||||||||||||||| targets:182   UAUGUUUGGUUUGUGGCUAACUAU   205 Target Full Sequence	0.0	TSA: Zea mays contig63928, mRNA sequence	NA	coding protein	psRNATarget
EU940943.1	ncRNA:24   GUACAAACCAAACACCGAUUGAUA   1   |||||||||||||||*|||||||| targets:212   CAUGUUUGGUUUGUGACUAACUAU   235 Target Full Sequence	1.5	Zea mays clone 1219298 mRNA sequence	NA	coding protein	psRNATarget
EZ061854.1	ncRNA:24   GUACAAACCAAACACCGAUUGAUA   1   |*||||||||||||||||||||=| targets:38   CCUGUUUGGUUUGUGGCUAACUGU   61 Target Full Sequence	1.5	TSA: Zea mays contig62976, mRNA sequence	NA	coding protein	psRNATarget
EZ517203.1	ncRNA:24   GUACAAACCAAACACCGAUUGAUA   1   =*|||||||||*|||||||||||| targets:86   UCUGUUUGGUUCGUGGCUAACUAU   109 Target Full Sequence	1.5	TSA: Zea mays cultivar W22 CL614Contig1.betc, mRNA sequence	NA	coding protein	psRNATarget
XM_008658625.2	ncRNA:24   GUACAAACCAAACACCGAUUGAUA   1   =*||||||||||||||||||*||| targets:8   UCUGUUUGGUUUGUGGCUAAAUAU   31 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103636257 (LOC103636257), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658619.2	ncRNA:24   GUACAAACCAAACACCGAUUGAUA   1   =*||||||||||||||||||*||| targets:8   UCUGUUUGGUUUGUGGCUAAAUAU   31 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103636257 (LOC103636257), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542331.1	ncRNA:24   GUACAAACCAAACACCGAUUGAUA   1   |||*|||*||||||*||||||||| targets:1609   CAUAUUUAGUUUGUUGCUAACUAU   1632 Target Full Sequence	2.5	PREDICTED: Zea mays octopine synthase binding factor 3 (obf3.2), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008657214.2	ncRNA:24   GUACAAACCAAACACCGAUUGAUA   1   |||*|||*||||||*||||||||| targets:1851   CAUAUUUAGUUUGUUGCUAACUAU   1874 Target Full Sequence	2.5	PREDICTED: Zea mays octopine synthase binding factor 3 (obf3.2), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008657213.2	ncRNA:24   GUACAAACCAAACACCGAUUGAUA   1   |||*|||*||||||*||||||||| targets:1936   CAUAUUUAGUUUGUUGCUAACUAU   1959 Target Full Sequence	2.5	PREDICTED: Zea mays octopine synthase binding factor 3 (obf3.2), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657212.2	ncRNA:24   GUACAAACCAAACACCGAUUGAUA   1   |||*|||*||||||*||||||||| targets:1948   CAUAUUUAGUUUGUUGCUAACUAU   1971 Target Full Sequence	2.5	PREDICTED: Zea mays octopine synthase binding factor 3 (obf3.2), transcript variant X1, mRNA	NA	coding protein	psRNATarget