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BaseInfo

ncRNA ID novel_zma_miR9895
Species Zea mays
Class miRNA
Genome position Chr5:61387132-61387198 [-]
Reference genome RefGen_v4
Source SRR1997865
Length 22
Mature sequence(if miRNA) 46 - UGGGUCAAGAAAGUAGAUGAAG - 67
Stem-loop(if miRNA) --     C      G  G    AGAAGCUGA      U
  UGGGU AAGAAA UA AUGA         UGGGUA G
  ||||| |||||| || ||||         ||||||
  ACCUA UUCUUU AU UACU         ACCUAU A
GG     U      -  G    --------G      U
Stem-loop sequence UGGGUCAAGAAAGUAGAUGAAGAAGCUGAUGGGUAUGAUUAUCCAGUCAUGUAUUUCUUUAUCCAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008683221.2
ncRNA:22   GAAG-UAGAUGAAAGAACUGGGU   1
  *|||-||||*|||||||||||||
targets:2862   GUUCUAUCUUCUUUCUUGACCCA   2884

3.0 PREDICTED: Zea mays uncharacterized LOC100273430 (pco141670(283)), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008683220.2
ncRNA:22   GAAG-UAGAUGAAAGAACUGGGU   1
  *|||-||||*|||||||||||||
targets:3024   GUUCUAUCUUCUUUCUUGACCCA   3046

3.0 PREDICTED: Zea mays uncharacterized LOC100273430 (pco141670(283)), transcript variant X1, mRNA NA coding protein psRNATarget