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BaseInfo

ncRNA ID	novel_zma_miR9884
Species	Zea mays
Class	miRNA
Genome position	Chr10:12403198-12403241 [-]
Reference genome	RefGen_v4
Source	SRR4237227
Length	20
Mature sequence(if miRNA)	25 - AGAGAUGGAUUGAAAGGACC - 44
Stem-loop(if miRNA)	--    A        A  -  C   AGAG UGGAUUGA AG GA C   |||| |||||||| || || A   UCUC ACCUAACU UC CU A AA    C        C  U  U
Stem-loop sequence	AGAGAUGGAUUGAAAGGACCAAUUCUCUCUCAAUCCACCUCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU943799.1	ncRNA:20   CCAGGAAAGUUAGGUAGAGA   1   *|||=|||*||||||||||| targets:470   AGUCUUUUGAAUCCAUCUCU   489 Target Full Sequence	2.5	Zea mays clone 1687963 mRNA sequence	NA	coding protein	psRNATarget
EZ088474.1	ncRNA:20   CCAGGAAAGUUAGGUAGAGA   1   *|||=|||*||||||||||| targets:2   AGUCUUUUGAAUCCAUCUCU   21 Target Full Sequence	2.5	TSA: Zea mays contig24120, mRNA sequence	NA	coding protein	psRNATarget
EU976671.1	ncRNA:20   CCAGGAAAGUUAGGUAGAGA   1   *|||=|||*||||||||||| targets:50   AGUCUUUUGAAUCCAUCUCU   69 Target Full Sequence	2.5	Zea mays clone 986724 ocs element-binding factor 1 mRNA, complete cds	NA	coding protein	psRNATarget
BT041927.1	ncRNA:20   CCAGGAAAGUUAGGUAGAGA   1   *|||=|||||||||||*||| targets:1201   UGUCUUUUCAAUCCAUAUCU   1220 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0081K04 mRNA, complete cds	NA	coding protein	psRNATarget
BT065965.1	ncRNA:20   CCAGGAAAGUUAGGUAGAGA   1   ||*|=||||||||||||||* targets:536   GGCCUUUUCAAUCCAUCUCC   555 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0106J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279829.1	ncRNA:20   CCAGGAAAGUUAGGUAGAGA   1   ||*|=||||||||||||||* targets:536   GGCCUUUUCAAUCCAUCUCC   555 Target Full Sequence	3.0	Zea mays uncharacterized LOC101027207 (LOC101027207), mRNA	NA	coding protein	psRNATarget
XM_020547641.1	ncRNA:20   CCAGGAAAGUUAGGUAGAGA   1   **||||*||||||||||||* targets:3156   AAUCCUCUCAAUCCAUCUCA   3175 Target Full Sequence	3.0	PREDICTED: Zea mays U11/U12 small nuclear ribonucleoprotein 48 kDa protein (LOC100279189), transcript variant X2, mRNA	NA	coding protein	psRNATarget