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BaseInfo

ncRNA ID	novel_zma_miR9880
Species	Zea mays
Class	miRNA
Genome position	Chr1:92835561-92835618 [+]
Reference genome	RefGen_v4
Source	SRR4237227
Length	24
Mature sequence(if miRNA)	1 - ACGGUCCGCGGUCUGGUGCGAGGC - 24
Stem-loop(if miRNA)	--         GG   G    -   -    G   ACGGUCCGC  UCU GUGC GAG GCAC G   |||||||||  ||| |||| ||| ||||   UGUCAGGCG  GGG CACG CUC CGUG U CC         --   A    U   U    G
Stem-loop sequence	ACGGUCCGCGGUCUGGUGCGAGGCACGGUGGUGCUCUCUGCACAGGGGCGGACUGUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT088349.1	ncRNA:24   CGGAGCGUGGUCUGGCGCCUGGCA   1   ||||||||||||=||||||||||| targets:1308   GCCUCGCACCAGGCCGCGGACCGU   1331 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   CGGAGCGUGGUCUGGCGCCUGGCA   1   |||*||||||||=||||||||||| targets:1235   GCCGCGCACCAGGCCGCGGACCGU   1258 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   CGGAGCGUGGUCUGGCGCCUGGCA   1   ||||||||||||=||||||||||| targets:1308   GCCUCGCACCAGGCCGCGGACCGU   1331 Target Full Sequence	1.5	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   CGGAGCGUGGUCUGGCGCCUGGCA   1   |||*||||||||=||||||||||| targets:1235   GCCGCGCACCAGGCCGCGGACCGU   1258 Target Full Sequence	1.5	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:24   CGGAGCGUGGUCUGGCGCCUGGCA   1   ||||||||||||=||||||||||| targets:2751   GCCUCGCACCAGGCCGCGGACCGU   2774 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:24   CGGAGCGUGGUCUGGCGCCUGGCA   1   |||**|||||||=||||||||||| targets:2678   GCCGGGCACCAGGCCGCGGACCGU   2701 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
LQ235209.1	ncRNA:24   CGGAGCGUGGUCUGGCGCCUGGCA   1   |=|**||*|=*||||||||||||| targets:29   GUCCGGCUCUUGACCGCGGACCGU   52 Target Full Sequence	3.0	Sequence 1204 from Patent EP2985353	NA	coding protein	psRNATarget
JB163540.1	ncRNA:24   CGGAGCGUGGUCUGGCGCCUGGCA   1   |=|**||*|=*||||||||||||| targets:29   GUCCGGCUCUUGACCGCGGACCGU   52 Target Full Sequence	3.0	Sequence 1204 from Patent EP2559767	NA	coding protein	psRNATarget
HI403079.1	ncRNA:24   CGGAGCGUGGUCUGGCGCCUGGCA   1   |=|**||*|=*||||||||||||| targets:29   GUCCGGCUCUUGACCGCGGACCGU   52 Target Full Sequence	3.0	Sequence 1204 from Patent EP2074227	NA	coding protein	psRNATarget
EZ073491.1	ncRNA:24   CGGAGCGUGGUCUGGCGCCUGGCA   1   |=|**||*||||=||||||||||| targets:83   GUCCGGCCCCAGGCCGCGGACCGU   106 Target Full Sequence	2.5	TSA: Zea mays contig09128, mRNA sequence	NA	coding protein	psRNATarget