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BaseInfo

ncRNA ID	novel_zma_miR9876
Species	Zea mays
Class	miRNA
Genome position	Chr1:4143342-4143423 [-]
Reference genome	RefGen_v4
Source	SRR4237227
Length	21
Mature sequence(if miRNA)	62 - GAGCAAGAGGAUUGGAGGGGC - 82
Stem-loop(if miRNA)	--       A                              U   GAGCAAG GGAUUGGAGGGGCUAAAAUCACCUUGCUAU C   ||||||| ||||||||||||||||||||||||||||||   CUCGUUU CCUAACCUCCCCGAUUUUAGUGGAACGAUA A CC       C                              A
Stem-loop sequence	GAGCAAGAGGAUUGGAGGGGCUAAAAUCACCUUGCUAUUCAAAUAGCAAGGUGAUUUUAGCCCCUCCAAUCCCUUUGCUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU974541.1	ncRNA:21   CGGGGAGGUUAGGAGAACGAG   1   ||||||=||||||*||||||| targets:1481   GCCCCUUCAAUCCCCUUGCUC   1501 Target Full Sequence	2.5	Zea mays clone 452157 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137538.2	ncRNA:21   CGGGGAGGUUAGGAGAACGAG   1   ||||||=||||||*||||||| targets:1580   GCCCCUUCAAUCCCCUUGCUC   1600 Target Full Sequence	2.5	Zea mays Ycf20-like protein (LOC100192115), mRNA	NA	coding protein	psRNATarget
XM_008682827.2	ncRNA:21   CGGGGAGGUUAGGAGAACGAG   1   ||||||=||||||*||||||| targets:1527   GCCCCUUCAAUCCCCUUGCUC   1547 Target Full Sequence	2.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008682826.2	ncRNA:21   CGGGGAGGUUAGGAGAACGAG   1   ||||||=||||||*||||||| targets:1620   GCCCCUUCAAUCCCCUUGCUC   1640 Target Full Sequence	2.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU957690.1	ncRNA:21   CGGGGAGGUUAGGAGAACGAG   1   ||||||=||||||*||||||| targets:1653   GCCCCUUCAAUCCCCUUGCUC   1673 Target Full Sequence	2.5	Zea mays clone 1610264 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682824.2	ncRNA:21   CGGGGAGGUUAGGAGAACGAG   1   ||||||=||||||*||||||| targets:1673   GCCCCUUCAAUCCCCUUGCUC   1693 Target Full Sequence	2.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008682823.2	ncRNA:21   CGGGGAGGUUAGGAGAACGAG   1   ||||||=||||||*||||||| targets:1719   GCCCCUUCAAUCCCCUUGCUC   1739 Target Full Sequence	2.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008682825.2	ncRNA:21   CGGGGAGGUUAGGAGAACGAG   1   ||||||=||||||*||||||| targets:1841   GCCCCUUCAAUCCCCUUGCUC   1861 Target Full Sequence	2.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X3, mRNA	NA	coding protein	psRNATarget