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BaseInfo

ncRNA ID novel_zma_miR9848
Species Zea mays
Class miRNA
Genome position Chr10:48860740-48860874 [+]
Reference genome RefGen_v4
Source SRR1997865
Length 24
Mature sequence(if miRNA) 1 - UCAGGGCAUGUUCGGUUACACCAA - 24
Stem-loop(if miRNA) --UC          C                  -A            A          U      CAA
    AGGGCAUGUU GGUUACACCAAUCUAGAG  GGAUUGGAGGGG UUAAAUCCCC CCUAGU   A
    |||||||||| ||||||||||||||||||  |||||||||||| |||||||||| ||||||
    UCCCGUACAA CCAAUGUGGUUAGGUCUC  UCUAACCUCCCC AAUUUAGGGG GGAUCA   A
GAAC          C                  CC            A          C      AUA
Stem-loop sequence UCAGGGCAUGUUCGGUUACACCAAUCUAGAGAGGAUUGGAGGGGAUUAAAUCCCCUCCUAGUCAAAAAUAACUAGGCGGGGAUUUAAACCCCUCCAAUCUCCCUCUGGAUUGGUGUAACCCAACAUGCCCUCAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020542894.1
ncRNA:24   AACCACAUUGGCUUGUACGGGACU   1
  |||||||||||||||||||||||*
targets:23   UUGGUGUAACCGAACAUGCCCUGC   46

1.0 PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 (LOC103636763), partial mRNA NA coding protein psRNATarget
EU968801.1
ncRNA:24   AACCACAUUGGCUUGUACGGGACU   1
  ||||||||||||||||||||||*|
targets:551   UUGGUGUAACCGAACAUGCCCUUA   574

1.5 Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds NA coding protein psRNATarget
NM_001157439.1
ncRNA:24   AACCACAUUGGCUUGUACGGGACU   1
  ||||||||||||||||||||||*|
targets:551   UUGGUGUAACCGAACAUGCCCUUA   574

1.5 Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA NA coding protein psRNATarget
XM_020548160.1
ncRNA:24   AACCACAUUGGCUUGUACGGGACU   1
  ||||||||||||||||*|||||||
targets:4820   UUGGUGUAACCGAACAAGCCCUGA   4843

1.5 PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008670752.2
ncRNA:24   AACCACAUUGGCUUGUACGGGACU   1
  ||||||||||||||||*|||||||
targets:5047   UUGGUGUAACCGAACAAGCCCUGA   5070

1.5 PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA NA coding protein psRNATarget
JB169178.1
ncRNA:24   AACCACAUUGGCUUGUACGGGACU   1
  |||||*|||*||||||||||||||
targets:38   UUGGUCUAAGCGAACAUGCCCUGA   61

2.0 Sequence 6842 from Patent EP2559767 NA coding protein psRNATarget
HI408717.1
ncRNA:24   AACCACAUUGGCUUGUACGGGACU   1
  |||||*|||*||||||||||||||
targets:38   UUGGUCUAAGCGAACAUGCCCUGA   61

2.0 Sequence 6842 from Patent EP2074227 NA coding protein psRNATarget
LQ240847.1
ncRNA:24   AACCACAUUGGCUUGUACGGGACU   1
  |||||*|||*||||||||||||||
targets:38   UUGGUCUAAGCGAACAUGCCCUGA   61

2.0 Sequence 6842 from Patent EP2985353 NA coding protein psRNATarget
EU957179.1
ncRNA:24   AACCACAUUGGCUUGUACGGGACU   1
  |*||||||||||||||*|||||||
targets:1586   UCGGUGUAACCGAACAAGCCCUGA   1609

1.5 Zea mays clone 1584995 mRNA sequence NA coding protein psRNATarget
AY110812.1
ncRNA:24   AAC-CACAUUGGCUUGUACGGGACU   1
  |||-|*|*|||||||||||||||*|
targets:209   UUGAGGGGAACCGAACAUGCCCUUA   233

2.5 Zea mays CL13054_1 mRNA sequence NA coding protein psRNATarget
NM_001165826.1
ncRNA:24   AACCACAUUGGCUUGUACGGGACU   1
  *****|||||||||||||||||*|
targets:1568   CCUUCGUAACCGAACAUGCCCUUA   1591

1.5 Zea mays uncharacterized LOC100304390 (LOC100304390), mRNA NA coding protein psRNATarget
BT061020.1
ncRNA:24   AACCACAUUGGCUUGUACGGGACU   1
  *****|||||||||||||||||*|
targets:1568   CCUUCGUAACCGAACAUGCCCUUA   1591

1.5 Zea mays full-length cDNA clone ZM_BFb0086M16 mRNA, complete cds NA coding protein psRNATarget
XM_008649778.2
ncRNA:24   AACCACAUUGGCUUGUACGGGACU   1
  *****|||||||||||||||||*|
targets:2014   CCUUCGUAACCGAACAUGCCCUUA   2037

1.5 PREDICTED: Zea mays uncharacterized LOC100304390 (LOC100304390), transcript variant X1, mRNA NA coding protein psRNATarget
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