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BaseInfo

ncRNA ID	novel_zma_miR9843
Species	Zea mays
Class	miRNA
Genome position	Chr8:36829177-36829254 [+]
Reference genome	RefGen_v4
Source	SRR4237227
Length	20
Mature sequence(if miRNA)	1 - GGAGCACCGUCGGCGCGUCC - 20
Stem-loop(if miRNA)	-   -  A   U      GUCC   - CCAUCUGUGCUGCC  GGA GC CCG CGGCGC    GCA C              G  ||| || ||| ||||||    ||| |  UCU CG GGC GCCGCG    GGC C              C G   G  C   U      ---A   C GCUCUUACGUGCGC
Stem-loop sequence	GGAGCACCGUCGGCGCGUCCGCACCCAUCUGUGCUGCCGCCGCGUGCAUUCUCGCCCGGAGCGCCGUCGGCGCGUCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008680281.2	ncRNA:20   CCU-GCGCGGCUGCCACGAGG   1   |||-||||||||||||||||| targets:189   GGAUCGCGCCGACGGUGCUCC   209 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103653353 (LOC103653353), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020551838.1	ncRNA:20   CCU-GCGCGGCUGCCACGAGG   1   |||-||||||||||||||||| targets:192   GGAUCGCGCCGACGGUGCUCC   212 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103653353 (LOC103653353), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY106252.1	ncRNA:20   CCUGCGCGGCUGCCACGAGG   1   *|||||||||=||||||||* targets:19   CGACGCGCCGGCGGUGCUCG   38 Target Full Sequence	2.5	Zea mays PCO094239 mRNA sequence	NA	coding protein	psRNATarget
BT056054.1	ncRNA:20   CCUGCGCGGCUGCCACGAGG   1   *|||||||||=||||||||* targets:1142   CGACGCGCCGGCGGUGCUCG   1161 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0164I21 mRNA, complete cds	NA	coding protein	psRNATarget
EU962351.1	ncRNA:20   CCUGCGCGGCUGCCACGAGG   1   *|||||||||=||||||||* targets:1056   CGACGCGCCGGCGGUGCUCG   1075 Target Full Sequence	2.5	Zea mays clone 241982 HGA4 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001155708.1	ncRNA:20   CCUGCGCGGCUGCCACGAGG   1   *|||||||||=||||||||* targets:1056   CGACGCGCCGGCGGUGCUCG   1075 Target Full Sequence	2.5	Zea mays HGA4 (LOC100282802), mRNA	NA	coding protein	psRNATarget
XM_008660395.2	ncRNA:20   CCUGCGCGGCUGCCACGAGG   1   *|||||||||=||||||||* targets:1312   CGACGCGCCGGCGGUGCUCG   1331 Target Full Sequence	2.5	PREDICTED: Zea mays HGA4 (LOC100282802), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT063846.1	ncRNA:20   CCUGCGCGGCUGCCACGAGG   1   *||||*||||||||||=||| targets:387   CGACGGGCCGACGGUGUUCC   406 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0112J11 mRNA, complete cds	NA	coding protein	psRNATarget
BT040292.1	ncRNA:20   CCUGCGCGGCUGCCACGAGG   1   *||||*||||||||||=||| targets:429   CGACGGGCCGACGGUGUUCC   448 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0076M10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175057.1	ncRNA:20   CCUGCGCGGCUGCCACGAGG   1   *||||*||||||||||=||| targets:387   CGACGGGCCGACGGUGUUCC   406 Target Full Sequence	2.5	Zea mays HSP40/DnaJ peptide-binding protein (LOC100382308), mRNA	NA	coding protein	psRNATarget
EU961716.1	ncRNA:20   CCUGCGCGGCUGCCACGAGG   1   *||||*||||||||||=||| targets:414   CGACGGGCCGACGGUGUUCC   433 Target Full Sequence	2.5	Zea mays clone 237829 dnaJ subfamily B member 5 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001155544.1	ncRNA:20   CCUGCGCGGCUGCCACGAGG   1   *||||*||||||||||=||| targets:414   CGACGGGCCGACGGUGUUCC   433 Target Full Sequence	2.5	Zea mays dnaJ subfamily B member 5 (LOC100282636), mRNA	NA	coding protein	psRNATarget
XM_008676971.2	ncRNA:20   CCUGCGCGGCUGCCACGAGG   1   *||||||||*|||||||||* targets:1043   CGACGCGCCCACGGUGCUCA   1062 Target Full Sequence	2.5	PREDICTED: Zea mays O-acyltransferase WSD1-like (LOC103651350), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550512.1	ncRNA:20   CCUGCGCGGCUGCCACGAGG   1   *||||||||*|||||||||* targets:1053   CGACGCGCCCACGGUGCUCA   1072 Target Full Sequence	2.5	PREDICTED: Zea mays O-acyltransferase WSD1-like (LOC103651350), transcript variant X2, mRNA	NA	coding protein	psRNATarget