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BaseInfo

ncRNA ID	novel_zma_miR9842
Species	Zea mays
Class	miRNA
Genome position	Chr8:46527957-46528025 [-]
Reference genome	RefGen_v4
Source	SRR4237227
Length	24
Mature sequence(if miRNA)	1 - AUAAGUUGGAUCAUAUAAUCUAGG - 24
Stem-loop(if miRNA)	--C         A                 UUAA    AGAUUAUGU AUCCAACUUAUUUUGAA    G    ||||||||| |||||||||||||||||    U    UCUAAUAUA UAGGUUGAAUAAAAUUU    G GGA         C                 CAAC
Stem-loop sequence	CAGAUUAUGUAAUCCAACUUAUUUUGAAUUAAGUGCAACUUUAAAAUAAGUUGGAUCAUAUAAUCUAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT037451.1	ncRNA:24   GGAUCUAAUAUACUAGGUUGAAUA   1   ||*=||||||||*||||||||||| targets:708   CCAGGAUUAUAUAAUCCAACUUAU   731 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0169O18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143245.1	ncRNA:24   GGAUCUAAUAUACUAGGUUGAAUA   1   ||*=||||||||*||||||||||| targets:708   CCAGGAUUAUAUAAUCCAACUUAU   731 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100216853), mRNA	NA	coding protein	psRNATarget
XM_008676816.2	ncRNA:24   GGAUCUAAUA-UACUAGGUUGAAUA   1   =||-||||=|-|||||||||||||| targets:1019   UCU-GAUUGUGAUGAUCCAACUUAU   1042 Target Full Sequence	3.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g58590 (LOC103651197), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676818.2	ncRNA:24   GGAUCUAAUA-UACUAGGUUGAAUA   1   =||-||||=|-|||||||||||||| targets:1004   UCU-GAUUGUGAUGAUCCAACUUAU   1027 Target Full Sequence	3.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g58590 (LOC103651197), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008676817.2	ncRNA:24   GGAUCUAAUA-UACUAGGUUGAAUA   1   =||-||||=|-|||||||||||||| targets:1019   UCU-GAUUGUGAUGAUCCAACUUAU   1042 Target Full Sequence	3.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g58590 (LOC103651197), transcript variant X2, mRNA	NA	coding protein	psRNATarget