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BaseInfo

ncRNA ID novel_zma_miR9838
Species Zea mays
Class miRNA
Genome position Chr7:179283369-179283434 [+]
Reference genome RefGen_v4
Source SRR4237227
Length 24
Mature sequence(if miRNA) 1 - AAUUAUGGGCUGUGCCGUGCCAGC - 24
Stem-loop(if miRNA) --    A              CCA  A  -  UGC
  AAUU UGGGCUGUGCCGUG   GC CG UG   C
  |||| ||||||||||||||   || || ||
  UUAA ACCCGGCACGGCAC   CG GC AC   C
GA    C              --C  -  U  UGA
Stem-loop sequence AAUUAUGGGCUGUGCCGUGCCAGCACGUGUGCCCAGUCAUCGGCCCACGGCACGGCCCACAAUUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020547541.1
ncRNA:24   CGACCGUGCCGUGUCGGGUAUUAA   1
  |||||||||||||=||||||||||
targets:3386   GCUGGCACGGCACGGCCCAUAAUU   3409

1.5 PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020548662.1
ncRNA:24   CGACCGUGCCGUGUCGGGUAUUAA   1
  ****|||||||||||||||||=|*
targets:1363   CGGAGCACGGCACAGCCCAUAGUG   1386

2.5 PREDICTED: Zea mays respiratory burst oxidase homolog protein B (LOC103648044), transcript variant X1, mRNA NA coding protein psRNATarget