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BaseInfo

ncRNA ID	novel_zma_miR9835
Species	Zea mays
Class	miRNA
Genome position	Chr7:100368972-100369093 [+]
Reference genome	RefGen_v4
Source	SRR4237227
Length	20
Mature sequence(if miRNA)	103 - AGGCAGUGAACCAAACAGAC - 122
Stem-loop(if miRNA)	--A           -  G      GC               -------------      CAC    GAA    UGUUUGGUUCG UG CUAACU  GCCACACUUUGCCUA             AGGUUA   GUUC   U    ||||||||||| || ||||||  |||||||||||||||             ||||||   ||||    ACAAACCAAGU AC GAUUGA  CGGUGUGAAACGGAU             UCCAAU   CAAG   U CAG           G  G      -A               UGAAAAGACGGAU      ---    AAG
Stem-loop sequence	AUGUUUGGUUCGUGGCUAACUGCGCCACACUUUGCCUAAGGUUACACGUUCGAAUUGAAGAACUAACCUUAGGCAGAAAAGUUAGGCAAAGUGUGGCAAGUUAGGCAGUGAACCAAACAGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968686.1	ncRNA:20   CAGACAAACCAAGUGACGGA   1   |||||||||||||||||||| targets:608   GUCUGUUUGGUUCACUGCCU   627 Target Full Sequence	0.0	Zea mays clone 323451 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT065161.1	ncRNA:20   CAGACAAACCAAGUGACGGA   1   |||||||||||||||||||| targets:591   GUCUGUUUGGUUCACUGCCU   610 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0009L23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550436.1	ncRNA:20   CAGACAAACCAAGUGACGGA   1   |||||||||||||||||||| targets:626   GUCUGUUUGGUUCACUGCCU   645 Target Full Sequence	0.0	PREDICTED: Zea mays 14 kDa zinc-binding protein-like (LOC100277449), mRNA	NA	coding protein	psRNATarget
EU945170.1	ncRNA:20   CAGACAAACCAAGUGACGGA   1   |*|||||||||||||||||| targets:840   GCCUGUUUGGUUCACUGCCU   859 Target Full Sequence	1.0	Zea mays clone 243250 mRNA sequence	NA	coding protein	psRNATarget
EU966347.1	ncRNA:20   CAGACAAACCAAGUGACGGA   1   |*|||||||||||||||||| targets:1324   GCCUGUUUGGUUCACUGCCU   1343 Target Full Sequence	1.0	Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
BT038009.1	ncRNA:20   CAGACAAACCAAGUGACGGA   1   **|||||||||||=|||||| targets:264   ACCUGUUUGGUUCGCUGCCU   283 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206M21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656231.2	ncRNA:20   CAGACAAACCAAGUGACGGA   1   **|||||||||||=|||||| targets:5227   ACCUGUUUGGUUCGCUGCCU   5246 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100216556), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU955574.1	ncRNA:20   CAGACAAACCAAGUGACGGA   1   |*||||||||||||||*||| targets:112   GCCUGUUUGGUUCACUACCU   131 Target Full Sequence	2.5	Zea mays clone 1537438 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149469.1	ncRNA:20   CAGACAAACCAAGUGACGGA   1   |*||||||||||||||*||| targets:112   GCCUGUUUGGUUCACUACCU   131 Target Full Sequence	2.5	Zea mays uncharacterized LOC100275382 (LOC100275382), mRNA	NA	coding protein	psRNATarget
NM_001147194.1	ncRNA:20   CAGACAAACCAAGUGACGGA   1   ||||||*|||||||*||||| targets:1675   GUCUGUCUGGUUCAAUGCCU   1694 Target Full Sequence	2.5	Zea mays Cation/calcium exchanger 5 (LOC100272741), mRNA	NA	coding protein	psRNATarget
BT039322.1	ncRNA:20   CAGACAAACCAAGUGACGGA   1   ||||||*|||||||*||||| targets:1675   GUCUGUCUGGUUCAAUGCCU   1694 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0005K21 mRNA, complete cds	NA	coding protein	psRNATarget
BT064583.1	ncRNA:20   CAGACAAACCAAGUGACGGA   1   |*||||||||||||||*||| targets:1632   GCCUGUUUGGUUCACUACCU   1651 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0185L15 mRNA, complete cds	NA	coding protein	psRNATarget
EU960971.1	ncRNA:20   CAGACAAACCAAGUGACGGA   1   |*||||||||||||||*||| targets:1702   GCCUGUUUGGUUCACUACCU   1721 Target Full Sequence	2.5	Zea mays clone 230073 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150092.1	ncRNA:20   CAGACAAACCAAGUGACGGA   1   |*||||||||||||||*||| targets:1702   GCCUGUUUGGUUCACUACCU   1721 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276261 (LOC100276261), mRNA	NA	coding protein	psRNATarget
BT018862.1	ncRNA:20   CAGACAAACCAAGUGACGGA   1   |*||||||||||||*||||| targets:1034   GCCUGUUUGGUUCAGUGCCU   1053 Target Full Sequence	2.5	Zea mays clone EL01N0559E06.d mRNA sequence	NA	coding protein	psRNATarget
XM_008662023.2	ncRNA:20   CAGACAAACCAAGUGACGGA   1   **|||||||*|||||||||| targets:2313   UACUGUUUGAUUCACUGCCU   2332 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103639263 (LOC103639263), transcript variant X2, mRNA	NA	coding protein	psRNATarget