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BaseInfo

ncRNA ID	novel_zma_miR9833
Species	Zea mays
Class	miRNA
Genome position	Chr7:17582847-17582935 [-]
Reference genome	RefGen_v4
Source	SRR4237227;SRR5099742
Length	21
Mature sequence(if miRNA)	1 - UUGAGGUGAAUACAUGGCAUC - 21
Stem-loop(if miRNA)	--    C                    C   U    -------    U   UGCC AUGUAUUCACCUCAAUCCAU UGU UUGG       GGUG U   |||| |||||||||||||||||||| ||| ||||       |||| C   ACGG UACAUAAGUGGAGUUAGGUA ACA AACU       CCAC C CU    -                    C   C    CACCUAA    A
Stem-loop sequence	UGCCCAUGUAUUCACCUCAAUCCAUCUGUUUUGGGGUGUUCCACACCAAUCCACUCAACACACAUGGAUUGAGGUGAAUACAUGGCAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT042729.1	ncRNA:21   CUACGGUACAUAAGUGGAGUU   1   |=||*|=*||||||||||||| targets:1695   GGUGACGAGUAUUCACCUCAA   1715 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0030P17 mRNA, complete cds	NA	coding protein	psRNATarget
EU957013.1	ncRNA:21   CUACGGUACAUAAGUGGAGUU   1   |=||*|=*||||||||||||| targets:1779   GGUGACGAGUAUUCACCUCAA   1799 Target Full Sequence	3.0	Zea mays clone 1580497 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149644.1	ncRNA:21   CUACGGUACAUAAGUGGAGUU   1   |=||*|=*||||||||||||| targets:1765   GGUGACGAGUAUUCACCUCAA   1785 Target Full Sequence	3.0	Zea mays RNA methyltransferase family protein (cl27616_1), mRNA	NA	coding protein	psRNATarget
BT067709.1	ncRNA:21   CUACGGUACAUAAGUGGAGUU   1   |=||*|=*||||||||||||| targets:1765   GGUGACGAGUAUUCACCUCAA   1785 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0125K08 mRNA, complete cds	NA	coding protein	psRNATarget
EZ088542.1	ncRNA:21   CUACGGUACAUAAGUGGAGUU   1   *=||||*||||||*||||||| targets:131   UGUGCCUUGUAUUGACCUCAA   151 Target Full Sequence	2.5	TSA: Zea mays contig24188, mRNA sequence	NA	coding protein	psRNATarget
XM_020538540.1	ncRNA:21   CUACGGUACAUAAGUGGAGUU   1   *=||||*||||||*||||||| targets:1258   CGUGCCUUGUAUUGACCUCAA   1278 Target Full Sequence	2.5	PREDICTED: Zea mays ankyrin repeat domain-containing protein 50 (LOC103627192), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538539.1	ncRNA:21   CUACGGUACAUAAGUGGAGUU   1   *=||||*||||||*||||||| targets:1509   CGUGCCUUGUAUUGACCUCAA   1529 Target Full Sequence	2.5	PREDICTED: Zea mays ankyrin repeat domain-containing protein 50 (LOC103627192), transcript variant X1, mRNA	NA	coding protein	psRNATarget