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BaseInfo

ncRNA ID novel_zma_miR9828
Species Zea mays
Class miRNA
Genome position Chr6:165674455-165674539 [+]
Reference genome RefGen_v4
Source SRR4237227
Length 21
Mature sequence(if miRNA) 1 - CCAGAGAUCACGAGGGGAUCC - 21
Stem-loop(if miRNA) --C   A           G                     AU
   CAG GAUCACGAGGG AUCCAUGGGGGAGGAAUCCCC  A
   ||| ||||||||||| |||||||||||||||||||||  G
   GUC CUAGUGCUCCC UAGGUACCCCCUCCUUAGGGG  C
CUA   C           G                     AG
Stem-loop sequence CCAGAGAUCACGAGGGGAUCCAUGGGGGAGGAAUCCCCAUAGCGAGGGGAUUCCUCCCCCAUGGAUGCCCUCGUGAUCCCUGAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403349.1
ncRNA:21   CCUAGGGGAGCACUAGAGACC   1
  *|||||||||||||||*||||
targets:118   AGAUCCCCUCGUGAUCCCUGG   138

1.5 Sequence 1474 from Patent EP2074227 NA coding protein psRNATarget
LQ235479.1
ncRNA:21   CCUAGGGGAGCACUAGAGACC   1
  *|||||||||||||||*||||
targets:118   AGAUCCCCUCGUGAUCCCUGG   138

1.5 Sequence 1474 from Patent EP2985353 NA coding protein psRNATarget
JB163810.1
ncRNA:21   CCUAGGGGAGCACUAGAGACC   1
  *|||||||||||||||*||||
targets:118   AGAUCCCCUCGUGAUCCCUGG   138

1.5 Sequence 1474 from Patent EP2559767 NA coding protein psRNATarget
HI403445.1
ncRNA:21   CCUAGGGGAGCACUAGAGACC   1
  ||||||*|||||||||*||||
targets:48   GGAUCCACUCGUGAUCCCUGG   68

2.5 Sequence 1570 from Patent EP2074227 NA coding protein psRNATarget
LQ235575.1
ncRNA:21   CCUAGGGGAGCACUAGAGACC   1
  ||||||*|||||||||*||||
targets:48   GGAUCCACUCGUGAUCCCUGG   68

2.5 Sequence 1570 from Patent EP2985353 NA coding protein psRNATarget
JB163906.1
ncRNA:21   CCUAGGGGAGCACUAGAGACC   1
  ||||||*|||||||||*||||
targets:48   GGAUCCACUCGUGAUCCCUGG   68

2.5 Sequence 1570 from Patent EP2559767 NA coding protein psRNATarget
EU962692.1
ncRNA:21   CCUAGGGGAGCACUAGAGACC   1
  ***||||||||||*|||||||
targets:491   CCCUCCCCUCGUGCUCUCUGG   511

2.5 Zea mays clone 244778 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
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