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BaseInfo

ncRNA ID	novel_zma_miR9827
Species	Zea mays
Class	miRNA
Genome position	Chr6:128724723-128724893 [+]
Reference genome	RefGen_v4
Source	SRR4237227
Length	24
Mature sequence(if miRNA)	148 - AUUAGUCUAUAGAAACCAAACACC - 171
Stem-loop(if miRNA)	--          G  G            U                          CC       C       C       G   UA   UGUUUGGUUU UA GGACUAAUUUUU GUCCCUCUAUUUUAUUUUAUUUUAGU  CUAAAUU CUAAAUA UGAAAAU AAA  G   |||||||||| || |||||||||||| ||||||||||||||||||||||||||  ||||||| ||||||| ||||||| |||   ACAAACCAAA AU UCUGAUUAAAAA CAGGGAGAUAAAAUAAAGUAAAAUUA  GAUUUAA GAUUUAU ACUUUUG UUU  A CC          G  A            U                          UA       C       -       A   UA
Stem-loop sequence	UGUUUGGUUUGUAGGGACUAAUUUUUUGUCCCUCUAUUUUAUUUUAUUUUAGUCCCUAAAUUCCUAAAUACUGAAAAUGAAAUAGAAUUUUAGUUUUCAUAUUUAGCAAUUUAGAUAUUAAAAUGAAAUAAAAUAGAGGGACUAAAAAUUAGUCUAUAGAAACCAAACACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008676145.2	ncRNA:24   CCACAAACCAAAGAUAUCUGAUUA   1   ||||||||||||||||=||||||| targets:829   GGUGUUUGGUUUCUAUGGACUAAU   852 Target Full Sequence	1.5	PREDICTED: Zea mays 23 kDa jasmonate-induced protein-like (LOC103650571), mRNA	NA	coding protein	psRNATarget
EU967404.1	ncRNA:24   CCACAAACCAAAGAUAUCUGAUUA   1   *||||||||||||||||||=|||| targets:1003   AGUGUUUGGUUUCUAUAGAUUAAU   1026 Target Full Sequence	1.5	Zea mays clone 302545 GTPase activating protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138696.1	ncRNA:24   CCACAAACCAAAGAUAUCUGAUUA   1   *||||||||||||||||||=|||| targets:1003   AGUGUUUGGUUUCUAUAGAUUAAU   1026 Target Full Sequence	1.5	Zea mays uncharacterized LOC100193590 (umc2776), mRNA	NA	coding protein	psRNATarget
EU956677.1	ncRNA:24   CCACAAACCAAAGAUAUCUGAUUA   1   |||||||||||||||*|||||||| targets:2011   GGUGUUUGGUUUCUAGAGACUAAU   2034 Target Full Sequence	1.5	Zea mays clone 1570443 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001111805.2	ncRNA:24   CC-ACAAACCAAAGAUAUCUGAUUA   1   ||-|||||*|||||||*|||||||| targets:1478   GGAUGUUUUGUUUCUAGAGACUAAU   1502 Target Full Sequence	2.5	Zea mays uncharacterized LOC542191 (TIDP2941), mRNA	NA	coding protein	psRNATarget
AY104678.1	ncRNA:24   CC-ACAAACCAAAGAUAUCUGAUUA   1   ||-|||||*|||||||*|||||||| targets:1467   GGAUGUUUUGUUUCUAGAGACUAAU   1491 Target Full Sequence	2.5	Zea mays PCO081661 mRNA sequence	NA	coding protein	psRNATarget