Search result

BaseInfo

ncRNA ID	novel_zma_miR9818
Species	Zea mays
Class	miRNA
Genome position	Chr6:68228587-68228630 [+]
Reference genome	RefGen_v4
Source	SRR4237226
Length	21
Mature sequence(if miRNA)	24 - UUGACACUCGGCAAAGCACUC - 44
Stem-loop(if miRNA)	--ACA               CC      CUUUGCCGAGUGUCA  C      |||||||||||||||      GAAACGGCUCACAGU  U CUCAC               UU
Stem-loop sequence	ACACUUUGCCGAGUGUCACCCUUUUGACACUCGGCAAAGCACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238171.1	ncRNA:21   CUCACGAAACGGCUCACAGUU   1   ||*||||||||=||||||||| targets:17   GAAUGCUUUGCUGAGUGUCAA   37 Target Full Sequence	2.5	Sequence 4166 from Patent EP2985353	NA	coding protein	psRNATarget
JB166502.1	ncRNA:21   CUCACGAAACGGCUCACAGUU   1   ||*||||||||=||||||||| targets:17   GAAUGCUUUGCUGAGUGUCAA   37 Target Full Sequence	2.5	Sequence 4166 from Patent EP2559767	NA	coding protein	psRNATarget
HI406041.1	ncRNA:21   CUCACGAAACGGCUCACAGUU   1   ||*||||||||=||||||||| targets:17   GAAUGCUUUGCUGAGUGUCAA   37 Target Full Sequence	2.5	Sequence 4166 from Patent EP2074227	NA	coding protein	psRNATarget
HI406693.1	ncRNA:21   CUCACGAAACGGCUCACAGUU   1   |||**|||||||||||||||| targets:65   GAGCUCUUUGCCGAGUGUCAA   85 Target Full Sequence	2.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:21   CUCACGAAACGGCUCACAGUU   1   |||**|||||||||||||||| targets:65   GAGCUCUUUGCCGAGUGUCAA   85 Target Full Sequence	2.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
JB167154.1	ncRNA:21   CUCACGAAACGGCUCACAGUU   1   |||**|||||||||||||||| targets:65   GAGCUCUUUGCCGAGUGUCAA   85 Target Full Sequence	2.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:21   CUCACGAAACGGCUCACAGUU   1   ****|*||||||||||||||| targets:883   UUUCGGUUUGCCGAGUGUCAA   903 Target Full Sequence	3.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:21   CUCACGAAACGGCUCACAGUU   1   ****|*||||||||||||||| targets:883   UUUCGGUUUGCCGAGUGUCAA   903 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
EU949560.1	ncRNA:21   CUCACGAAACGGCUCACAGUU   1   *|***|||||||||||||||| targets:626   AAAAACUUUGCCGAGUGUCAA   646 Target Full Sequence	3.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
LQ238622.1	ncRNA:21   CUCACGAAACGGCUCACAGUU   1   |*||*||*||||||||||||= targets:24   GCGUACUGUGCCGAGUGUCAG   44 Target Full Sequence	3.0	Sequence 4617 from Patent EP2985353	NA	coding protein	psRNATarget
HI406492.1	ncRNA:21   CUCACGAAACGGCUCACAGUU   1   |*||*||*||||||||||||= targets:24   GCGUACUGUGCCGAGUGUCAG   44 Target Full Sequence	3.0	Sequence 4617 from Patent EP2074227	NA	coding protein	psRNATarget
JB166953.1	ncRNA:21   CUCACGAAACGGCUCACAGUU   1   |*||*||*||||||||||||= targets:24   GCGUACUGUGCCGAGUGUCAG   44 Target Full Sequence	3.0	Sequence 4617 from Patent EP2559767	NA	coding protein	psRNATarget
HI406203.1	ncRNA:21   CUCACGAAACGGCUCACAGUU   1   *|*|*|||||||||||||||* targets:49   AACUCCUUUGCCGAGUGUCAC   69 Target Full Sequence	3.0	Sequence 4328 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238333.1	ncRNA:21   CUCACGAAACGGCUCACAGUU   1   *|*|*|||||||||||||||* targets:49   AACUCCUUUGCCGAGUGUCAC   69 Target Full Sequence	3.0	Sequence 4328 from Patent EP2985353	NA	coding protein	psRNATarget
JB166664.1	ncRNA:21   CUCACGAAACGGCUCACAGUU   1   *|*|*|||||||||||||||* targets:49   AACUCCUUUGCCGAGUGUCAC   69 Target Full Sequence	3.0	Sequence 4328 from Patent EP2559767	NA	coding protein	psRNATarget
BT042352.1	ncRNA:21   CUCACGAAACGGCUCACAGUU   1   *||**|||||||||||||||* targets:1202   UAGCUCUUUGCCGAGUGUCAU   1222 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148473.2	ncRNA:21   CUCACGAAACGGCUCACAGUU   1   *||**|||||||||||||||* targets:1252   UAGCUCUUUGCCGAGUGUCAU   1272 Target Full Sequence	3.0	Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA	NA	coding protein	psRNATarget