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BaseInfo

ncRNA ID	novel_zma_miR9817
Species	Zea mays
Class	miRNA
Genome position	Chr10:145459345-145459516 [-]
Reference genome	RefGen_v4
Source	SRR4237226
Length	21
Mature sequence(if miRNA)	1 - UCUCAUGGAACCAAACAGGCC - 21
Stem-loop(if miRNA)	--                           CAG     AAUCCC                     -   AA   AAACACCCAACAUAUGGU   CCUGUUUGGUUCUAUGGGACUAAACUU   AGUUU      UCCCUUUUAGUCCCUAAAUUG CGA  GUG                  U   |||||||||||||||||||||||||||   |||||      ||||||||||||||||||||| |||  |||   GGACAAACCAAGGUACUCUGAUUUGAA   UCAGA      AGGGAAAAUCAGGGAUUUAAC GUU  UGU                  U CC                           --A     -----C                     A   --   GUUCCUGAUUUUACCUGA
Stem-loop sequence	CCUGUUUGGUUCUAUGGGACUAAACUUCAGAGUUUAAUCCCUCCCUUUUAGUCCCUAAAUUGCGAAAGUGAAACACCCAACAUAUGGUUUAGUCCAUUUUAGUCCUUGUGUUUGACAAUUUAGGGACUAAAAGGGACAGACUAAAGUUUAGUCUCAUGGAACCAAACAGGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT067716.1	ncRNA:21   CCGGACAAACCAAGGUACUCU   1   |||*||||||||||||||||| targets:1397   GGCAUGUUUGGUUCCAUGAGA   1417 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0138J16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176237.1	ncRNA:21   CCGGACAAACCAAGGUACUCU   1   |||*||||||||||||||||| targets:1397   GGCAUGUUUGGUUCCAUGAGA   1417 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383589 (LOC100383589), mRNA	NA	coding protein	psRNATarget
BT066057.2	ncRNA:21   CCGGACAAACCAAGGUACUCU   1   |||*||||||||||||*|||| targets:775   GGCAUGUUUGGUUCCAAGAGA   795 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0211I17 mRNA, complete cds	NA	coding protein	psRNATarget
AY111315.1	ncRNA:21   CCGGACAAACCAAGGUACUCU   1   **||||||||||||*|||||| targets:772   UCCCUGUUUGGUUCAAUGAGA   792 Target Full Sequence	1.5	Zea mays CL3160_1 mRNA sequence	NA	coding protein	psRNATarget