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BaseInfo

ncRNA ID novel_zma_miR9810
Species Zea mays
Class miRNA
Genome position Chr5:9453255-9453474 [-]
Reference genome RefGen_v4
Source SRR4237226
Length 23
Mature sequence(if miRNA) 1 - ACCGGCUCACCAUCGUCUGGCCU - 23
Stem-loop(if miRNA) --                          C                         U     C         U   C    C               U  C  CUA     A
  GCCAGACGAUGGUGAGCCGGUGUACU UGUCCGGAUGUGUGGUCACAAAAUU AAAGC GCCCCGGCU CAU UGUG GCUUCUCUUCUCUUA GU GG   CUAAG U
  |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| ||| |||| ||||||||||||||| || ||   |||||
  CGGUCUGCUACCACUCGGCCACAUGA ACAGGCCUACACACCAGUGUUUUAA UUUCG CGGGGCCGA GUA ACAC CGAAGAGAAGAGAAU CA CC   GAUUC C
UC                          U                         U     A         C   C    A               C  C  CAC     A
Stem-loop sequence GCCAGACGAUGGUGAGCCGGUGUACUCUGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCCCGGCUUCAUCUGUGCGCUUCUCUUCUCUUAUGUCGGCUACUAAGAUCACUUAGCACCCCACCUAAGAGAAGAGAAGCACACACAUGCAGCCGGGGCAGCUUUUAAUUUUGUGACCACACAUCCGGACAUAGUACACCGGCUCACCAUCGUCUGGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020538582.1
ncRNA:23   UCC--GGUCUGCUACCACUCGGCCA   1
  |||--||||||||||||||||||||
targets:3201   AGGAGCCAGACGAUGGUGAGCCGGU   3225

0.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538581.1
ncRNA:23   UCC--GGUCUGCUACCACUCGGCCA   1
  |||--||||||||||||||||||||
targets:3339   AGGAGCCAGACGAUGGUGAGCCGGU   3363

0.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA NA coding protein psRNATarget