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BaseInfo

ncRNA ID	novel_zma_miR9809
Species	Zea mays
Class	miRNA
Genome position	Chr5:37904681-37904811 [+]
Reference genome	RefGen_v4
Source	SRR4237226
Length	21
Mature sequence(if miRNA)	1 - UUCCAAAUCGUAAGUCGUUCU - 21
Stem-loop(if miRNA)	--        C          C           G    A  CCUUCUCCUACAC              UUCCAAAU GUAAGUCGUU UGGCUUUUCUA AUAC UA             AUCUAGAUAUGU   |||||||| |||||||||| ||||||||||| |||| ||             |||||||||||G   AAGGUUUA CAUUCAGCAA GCCGAAAAGAU UAUG AU             UAGAUCUGUAUG GG        A          A           A    C  CAAAAAAUAUACA
Stem-loop sequence	UUCCAAAUCGUAAGUCGUUCUGGCUUUUCUAGAUACAUACCUUCUCCUACACAUCUAGAUAUGUGGUAUGUCUAGAUACAUAUAAAAAACUACGUAUAUAGAAAAGCCGAAACGACUUACAAUUUGGAAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ060793.1	ncRNA:21   UCUUGCUGAAUGCUAAACCUU   1   |*||||*|||=|||||||||| targets:253   AAAACGUCUUGCGAUUUGGAA   273 Target Full Sequence	2.5	TSA: Zea mays contig61915, mRNA sequence	NA	coding protein	psRNATarget
NM_001149598.1	ncRNA:21   UCUUGCUGAAUGCUAAACCUU   1   |*||=|||||||*|||||||| targets:2011   AAAAUGACUUACAAUUUGGAA   2031 Target Full Sequence	2.5	Zea mays hypothetical protein (cl2814_1a), mRNA	NA	coding protein	psRNATarget
EU956616.1	ncRNA:21   UCUUGCUGAAUGCUAAACCUU   1   |*||=|||||||*|||||||| targets:2011   AAAAUGACUUACAAUUUGGAA   2031 Target Full Sequence	2.5	Zea mays clone 1568188 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
JB169518.1	ncRNA:21   UCUUGCUGAAUGCUAAACCUU   1   |*|||*||||||*|||||||| targets:101   AAAACAACUUACAAUUUGGAA   121 Target Full Sequence	2.5	Sequence 7182 from Patent EP2559767	NA	coding protein	psRNATarget
HI409057.1	ncRNA:21   UCUUGCUGAAUGCUAAACCUU   1   |*|||*||||||*|||||||| targets:101   AAAACAACUUACAAUUUGGAA   121 Target Full Sequence	2.5	Sequence 7182 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241187.1	ncRNA:21   UCUUGCUGAAUGCUAAACCUU   1   |*|||*||||||*|||||||| targets:101   AAAACAACUUACAAUUUGGAA   121 Target Full Sequence	2.5	Sequence 7182 from Patent EP2985353	NA	coding protein	psRNATarget
EU971512.1	ncRNA:21   UCUUGCUGAAUGCUAAACCUU   1   |*|||*||||||*|||||||| targets:167   AAAACAACUUACAAUUUGGAA   187 Target Full Sequence	2.5	Zea mays clone 366426 mRNA sequence	NA	coding protein	psRNATarget
XM_008648077.2	ncRNA:21   UCUUGCUGAAUGCUAAACCUU   1   |*|||*||||||*|||||||| targets:3246   AAAACUACUUACAAUUUGGAA   3266 Target Full Sequence	2.5	PREDICTED: Zea mays DNA repair and recombination protein RAD54 (LOC103627774), mRNA	NA	coding protein	psRNATarget