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BaseInfo

ncRNA ID novel_zma_miR9802
Species Zea mays
Class miRNA
Genome position Chr5:194359706-194359801 [-]
Reference genome RefGen_v4
Source SRR4237226
Length 24
Mature sequence(if miRNA) 1 - AUUCUGAAGGGGAUUUGAGGUUCC - 24
Stem-loop(if miRNA) --AAA         G           A     GC  GA A      UA
     CUCAAAUCC UUUCGGGAUUG AGGGG  UG  G GGAAAU  A
     ||||||||| ||||||||||| |||||  ||  | ||||||
     GAGUUUAGG GAAGUCUUAAC UCCCC  AC  C CCUUUA  U
CCUUG         G           C     UA  UC A      CU
Stem-loop sequence AAACUCAAAUCCGUUUCGGGAUUGAAGGGGGCUGGAGAGGAAAUUAAUUCAUUUCCACCUCAAUCCCCUCCAAUUCUGAAGGGGAUUUGAGGUUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020545649.1
ncRNA:24   CCUUGGAGUUUAGGGGAAGUCUUA   1
  *|||*|||||||||||||||||||
targets:660   UGAAACUCAAAUCCCCUUCAGAAU   683

0.0 PREDICTED: Zea mays zinc finger BED domain-containing protein DAYSLEEPER-like (LOC109942989), transcript variant X5, mRNA NA coding protein psRNATarget