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BaseInfo

ncRNA ID	novel_zma_miR9800
Species	Zea mays
Class	miRNA
Genome position	Chr5:218452756-218452875 [+]
Reference genome	RefGen_v4
Source	SRR4237226
Length	24
Mature sequence(if miRNA)	97 - ACAUUUAGGCACGAACCAAACAGC - 120
Stem-loop(if miRNA)	--           A         -                ACUUUUCUGCCUA         C   A   UGUUUGGUUUG UGCUUAAGU UGCCACACUUUGCCUA             AGGUUAGUU UUC A   ||||||||||| ||||||||| ||||||||||||||||             ||||||||| ||| U   ACAAACCAAGC ACGGAUUUA ACGGUGUGAAACGGAU             UCCAAUCAG AAG U CG           -         C                -------------         C   C
Stem-loop sequence	UGUUUGGUUUGAUGCUUAAGUUGCCACACUUUGCCUAACUUUUCUGCCUAAGGUUAGUUCUUCAAUUCGAACGACUAACCUUAGGCAAAGUGUGGCACAUUUAGGCACGAACCAAACAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU967316.1	ncRNA:24   CGACAAACCAAGCACGGAUUUACA   1   |||||||||||||||*|||||||| targets:483   GCUGUUUGGUUCGUGGCUAAAUGU   506 Target Full Sequence	1.5	Zea mays clone 301383 diphthamide biosynthesis protein 3 mRNA, complete cds	NA	coding protein	psRNATarget
AY104775.1	ncRNA:24   CGACAAACCAAGCACGGAUUUACA   1   |||||||||||||||*|||||||| targets:548   GCUGUUUGGUUCGUGGCUAAAUGU   571 Target Full Sequence	1.5	Zea mays PCO061308 mRNA sequence	NA	coding protein	psRNATarget
XM_008649194.2	ncRNA:24   CGACAAACCAAGCACGGAUUUACA   1   |||||||||||||||*|||||||| targets:1014   GCUGUUUGGUUCGUGGCUAAAUGU   1037 Target Full Sequence	1.5	PREDICTED: Zea mays D-aminoacyl-tRNA deacylase (AY104775), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT035068.1	ncRNA:24   CGACAAACCAAGCACGGAUUUACA   1   |||||||||||||||*|||||||| targets:1154   GCUGUUUGGUUCGUGGCUAAAUGU   1177 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0035J23 mRNA, complete cds	NA	coding protein	psRNATarget
BT036147.1	ncRNA:24   CGACAAACCAAGCACGGAUUUACA   1   |||||||||||||||*|||||||| targets:1155   GCUGUUUGGUUCGUGGCUAAAUGU   1178 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0098I08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138873.1	ncRNA:24   CGACAAACCAAGCACGGAUUUACA   1   |||||||||||||||*|||||||| targets:1155   GCUGUUUGGUUCGUGGCUAAAUGU   1178 Target Full Sequence	1.5	Zea mays D-aminoacyl-tRNA deacylase (AY104775), mRNA	NA	coding protein	psRNATarget
AY111895.1	ncRNA:24   CG-ACAAACCAAGCACGGAUUUACA   1   ||-||||||*||||||*|||||||| targets:260   GCAUGUUUGAUUCGUGACUAAAUGU   284 Target Full Sequence	2.5	Zea mays CL41465_1 mRNA sequence	NA	coding protein	psRNATarget