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BaseInfo

ncRNA ID	novel_zma_miR9790
Species	Zea mays
Class	miRNA
Genome position	Chr4:209193000-209193166 [-]
Reference genome	RefGen_v4
Source	SRR4237226;SRR4237227
Length	24
Mature sequence(if miRNA)	1 - AUAUUAGUCACUAGAAACCAAACA - 24
Stem-loop(if miRNA)	--            G              C   A         CC         CUA                         C   UUUGGUUUCUAG GACUAAUGUUUAGU CCU CAUUUUAUU  AUUUUAGUU   AAAUUGCUAAAUAUAGAAACUAAAA U   |||||||||||| |||||||||||||| ||| |||||||||  |||||||||   ||||||||||||||||||||||||| C   AAACCAAAGAUC CUGAUUAUAAAUCA GGA GUAAAAUAA  UAAAAUCAG   UUUAACGGUUUAUAUUUUUGAUUUU U AC            A              A   A         AA         ACA                         A
Stem-loop sequence	UUUGGUUUCUAGGGACUAAUGUUUAGUCCCUACAUUUUAUUCCAUUUUAGUUCUAAAAUUGCUAAAUAUAGAAACUAAAACUCUAUUUUAGUUUUUAUAUUUGGCAAUUUACAGACUAAAAUAAAAUAAAAUGAAGGAACUAAAUAUUAGUCACUAGAAACCAAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235087.1	ncRNA:24   ACAAACCAAAGAUCACUGAUUAUA   1   |||||||||||||||||||||||| targets:5   UGUUUGGUUUCUAGUGACUAAUAU   28 Target Full Sequence	0.0	Sequence 1082 from Patent EP2985353	NA	coding protein	psRNATarget
HI402995.1	ncRNA:24   ACAAACCAAAGAUCACUGAUUAUA   1   |||||||||||||||||||||||| targets:5   UGUUUGGUUUCUAGUGACUAAUAU   28 Target Full Sequence	0.0	Sequence 1120 from Patent EP2074227	NA	coding protein	psRNATarget
HI402957.1	ncRNA:24   ACAAACCAAAGAUCACUGAUUAUA   1   |||||||||||||||||||||||| targets:5   UGUUUGGUUUCUAGUGACUAAUAU   28 Target Full Sequence	0.0	Sequence 1082 from Patent EP2074227	NA	coding protein	psRNATarget
JB163456.1	ncRNA:24   ACAAACCAAAGAUCACUGAUUAUA   1   |||||||||||||||||||||||| targets:5   UGUUUGGUUUCUAGUGACUAAUAU   28 Target Full Sequence	0.0	Sequence 1120 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235125.1	ncRNA:24   ACAAACCAAAGAUCACUGAUUAUA   1   |||||||||||||||||||||||| targets:5   UGUUUGGUUUCUAGUGACUAAUAU   28 Target Full Sequence	0.0	Sequence 1120 from Patent EP2985353	NA	coding protein	psRNATarget
JB163418.1	ncRNA:24   ACAAACCAAAGAUCACUGAUUAUA   1   |||||||||||||||||||||||| targets:5   UGUUUGGUUUCUAGUGACUAAUAU   28 Target Full Sequence	0.0	Sequence 1082 from Patent EP2559767	NA	coding protein	psRNATarget
HI403095.1	ncRNA:24   ACAAACCAAAGAUCACUGAUUAUA   1   |||||||||||||||||||||||| targets:5   UGUUUGGUUUCUAGUGACUAAUAU   28 Target Full Sequence	0.0	Sequence 1220 from Patent EP2074227	NA	coding protein	psRNATarget
JB163556.1	ncRNA:24   ACAAACCAAAGAUCACUGAUUAUA   1   |||||||||||||||||||||||| targets:5   UGUUUGGUUUCUAGUGACUAAUAU   28 Target Full Sequence	0.0	Sequence 1220 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235225.1	ncRNA:24   ACAAACCAAAGAUCACUGAUUAUA   1   |||||||||||||||||||||||| targets:5   UGUUUGGUUUCUAGUGACUAAUAU   28 Target Full Sequence	0.0	Sequence 1220 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001152323.1	ncRNA:24   ACAAACCAAAGAUCACUGAUUAUA   1   ||||||||||||||*||||||||| targets:1935   UGUUUGGUUUCUAGGGACUAAUAU   1958 Target Full Sequence	1.5	Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA	NA	coding protein	psRNATarget
BT053999.2	ncRNA:24   ACAAACCAAAGAUCACUGAUUAUA   1   ||||||||||||||*||||||||| targets:1935   UGUUUGGUUUCUAGGGACUAAUAU   1958 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds	NA	coding protein	psRNATarget
BT065747.2	ncRNA:24   ACAAACCAAAGAUCACUGAUUAUA   1   ||||||||||||||*||||||||| targets:765   UGUUUGGUUUCUAGGGACUAAUAU   788 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds	NA	coding protein	psRNATarget
EZ060524.1	ncRNA:24   ACAAACCAAAGAUCACUGAUUAUA   1   ||||||||||||||||||||||*| targets:45   UGUUUGGUUUCUAGUGACUAAUUU   68 Target Full Sequence	1.5	TSA: Zea mays contig61646, mRNA sequence	NA	coding protein	psRNATarget
XM_008654984.2	ncRNA:24   ACAAACCAAAGAUCACUGAUUAUA   1   ||||||||||*|||*||||||||| targets:2907   UGUUUGGUUUGUAGGGACUAAUAU   2930 Target Full Sequence	2.5	PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA	NA	coding protein	psRNATarget
NM_001153051.1	ncRNA:24   ACAAACCAAAGAUCACUGAUUAUA   1   ||*|||||||||||*||||||||| targets:788   UGCUUGGUUUCUAGGGACUAAUAU   811 Target Full Sequence	1.5	Zea mays NAD(P)-binding Rossmann-fold superfamily protein (LOC100280114), mRNA	NA	coding protein	psRNATarget
BT055601.1	ncRNA:24   ACAAACCAAAGAUCACUGAUUAUA   1   ||*|||||||||||*||||||||| targets:788   UGCUUGGUUUCUAGGGACUAAUAU   811 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0063A22 mRNA, complete cds	NA	coding protein	psRNATarget