Search result

BaseInfo

ncRNA ID	novel_zma_miR9789
Species	Zea mays
Class	miRNA
Genome position	Chr10:122300163-122300214 [-]
Reference genome	RefGen_v4
Source	SRR4237226
Length	24
Mature sequence(if miRNA)	29 - AACGGGAUUAACCGAACAAAGCCU - 52
Stem-loop(if miRNA)	--AAC    -            A   U      GGGA UUAACCGAACAA GCC U      |||| |||||||||||| |||      CUCU GAUUGGCUUGUU CGG A CCUAA    C            -   G
Stem-loop sequence	AACGGGAUUAACCGAACAAAGCCUUAGGGCUUGUUCGGUUAGCUCUCAAUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008672285.2	ncRNA:24   UCCGAAACAAGCCAAUUAGGGCAA   1   ||||||||||||||||||||=||| targets:1056   AGGCUUUGUUCGGUUAAUCCUGUU   1079 Target Full Sequence	1.5	PREDICTED: Zea mays 5-formyltetrahydrofolate cyclo-ligase, mitochondrial (LOC103647771), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672284.2	ncRNA:24   UCCGAAACAAGCCAAUUAGGGCAA   1   ||||||||||||||||||||=||| targets:1114   AGGCUUUGUUCGGUUAAUCCUGUU   1137 Target Full Sequence	1.5	PREDICTED: Zea mays 5-formyltetrahydrofolate cyclo-ligase, mitochondrial (LOC103647771), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ064093.1	ncRNA:24   UCCGAAACAAGCCAAUUAGGGCAA   1   ||||*||||||||||||||||||| targets:100   AGGCCUUGUUCGGUUAAUCCCGUU   123 Target Full Sequence	0.0	TSA: Zea mays contig65216, mRNA sequence	NA	coding protein	psRNATarget
BT086633.1	ncRNA:24   UCCGAAACAAGCCAAUUAGGGCAA   1   ||||*||||||||||||||||||| targets:367   AGGCCUUGUUCGGUUAAUCCCGUU   390 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds	NA	coding protein	psRNATarget
BT063416.1	ncRNA:24   UCCGAAACAAGCCAAUUAGGGCAA   1   ||||*||||||||||||||||||| targets:1992   AGGCCUUGUUCGGUUAAUCCCGUU   2015 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154362.2	ncRNA:24   UCCGAAACAAGCCAAUUAGGGCAA   1   ||||*||||||||||||||||||| targets:2064   AGGCCUUGUUCGGUUAAUCCCGUU   2087 Target Full Sequence	0.0	Zea mays protein kinase domain containing protein (LOC100281444), mRNA	NA	coding protein	psRNATarget
EU956718.1	ncRNA:24   UCCGAAACAAGCCAAUUAGGGCAA   1   ||||*||||||||||||||||||| targets:2065   AGGCCUUGUUCGGUUAAUCCCGUU   2088 Target Full Sequence	0.0	Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674604.2	ncRNA:24   UCCGAAACAAGCCAAUUAGGGCAA   1   ||||*||||||||||||||||||| targets:2193   AGGCCUUGUUCGGUUAAUCCCGUU   2216 Target Full Sequence	0.0	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020549704.1	ncRNA:24   UCCGAAACAAGCCAAUUAGGGCAA   1   ||||*||||||||||||||||||| targets:2200   AGGCCUUGUUCGGUUAAUCCCGUU   2223 Target Full Sequence	0.0	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549703.1	ncRNA:24   UCCGAAACAAGCCAAUUAGGGCAA   1   ||||*||||||||||||||||||| targets:2260   AGGCCUUGUUCGGUUAAUCCCGUU   2283 Target Full Sequence	0.0	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU962625.1	ncRNA:24   UCCGAAACAAGCCAAUUAGGGCAA   1   ||||*|||||||||||||||=||| targets:519   AGGCCUUGUUCGGUUAAUCCUGUU   542 Target Full Sequence	1.5	Zea mays clone 244290 mRNA sequence	NA	coding protein	psRNATarget
XM_020542014.1	ncRNA:24   UCCGAAACAAGCCAAUUAGGGCAA   1   |||=|||||||*|||||||||||| targets:87   AGGUUUUGUUCAGUUAAUCCCGUU   110 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100277104 (LOC100277104), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008671671.2	ncRNA:24   UCCGAAACAAGCCAAUUAGGGCAA   1   ||*|*||||||||||||||||||| targets:1518   AGACCUUGUUCGGUUAAUCCCGUU   1541 Target Full Sequence	0.0	PREDICTED: Zea mays cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (LOC103647117), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008671669.2	ncRNA:24   UCCGAAACAAGCCAAUUAGGGCAA   1   ||*|*||||||||||||||||||| targets:1542   AGACCUUGUUCGGUUAAUCCCGUU   1565 Target Full Sequence	0.0	PREDICTED: Zea mays cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (LOC103647117), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008671670.2	ncRNA:24   UCCGAAACAAGCCAAUUAGGGCAA   1   ||*|*||||||||||||||||||| targets:1589   AGACCUUGUUCGGUUAAUCCCGUU   1612 Target Full Sequence	0.0	PREDICTED: Zea mays cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (LOC103647117), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008671674.2	ncRNA:24   UCCGAAACAAGCCAAUUAGGGCAA   1   ||*|*||||||||||||||||||| targets:1674   AGACCUUGUUCGGUUAAUCCCGUU   1697 Target Full Sequence	0.0	PREDICTED: Zea mays cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (LOC103647117), transcript variant X5, mRNA	NA	coding protein	psRNATarget