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BaseInfo

ncRNA ID	novel_zma_miR9786
Species	Zea mays
Class	miRNA
Genome position	Chr4:194503477-194503632 [+]
Reference genome	RefGen_v4
Source	SRR4237226
Length	24
Mature sequence(if miRNA)	1 - AACACUCGGCAAAGAACUCUUUGC - 24
Stem-loop(if miRNA)	--          A     -                G     G                 -CC              AAA   AACACUCGGC AAGAA CUCUUUGCCGAGUGUU UAUUU UGACACUCGGCAAAGAG   CUUUGCCGAGUGUC   A   |||||||||| ||||| |||||||||||||||| ||||| |||||||||||||||||   ||||||||||||||   UUGUGAGCCG UUCUU GAGAAACGGCUCACAA AUAAA AUUGUGAGCCGUUUCUC   GAAACGGCUCACAG   A UU          C     C                A     A                 AAA              AAA
Stem-loop sequence	AACACUCGGCAAAGAACUCUUUGCCGAGUGUUGUAUUUGUGACACUCGGCAAAGAGCCCUUUGCCGAGUGUCAAAAAAAAGACACUCGGCAAAGAAACUCUUUGCCGAGUGUUAAAAAUAAAACACUCGGCAAAGAGCUUCUUCGCCGAGUGUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU949560.1	ncRNA:24   CGUUUCUCAAGAAACGGCUCACAA   1   ||||||=||||||||||||||||| targets:585   GCAAAGGGUUCUUUGCCGAGUGUU   608 Target Full Sequence	1.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   CGUUUCUCAAGAAACGGCUCACAA   1   ||||||||*||||||||||||||| targets:100   GCAAAGAGCUCUUUGCCGAGUGUU   123 Target Full Sequence	1.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   CGUUUCUCAAGAAACGGCUCACAA   1   ||||||||*||||||||||||||* targets:60   GCAAAGAGCUCUUUGCCGAGUGUC   83 Target Full Sequence	2.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   CGUUUCU-CAAGAAACGGCUCACAA   1   |||||||-|*||||||||||||||| targets:19   GCAAAGAAGCUCUUUGCCGAGUGUU   43 Target Full Sequence	3.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   CGUUUCUCAAGAAACGGCUCACAA   1   ||||||||*||||||||||||||| targets:100   GCAAAGAGCUCUUUGCCGAGUGUU   123 Target Full Sequence	1.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   CGUUUCUCAAGAAACGGCUCACAA   1   ||||||||*||||||||||||||* targets:60   GCAAAGAGCUCUUUGCCGAGUGUC   83 Target Full Sequence	2.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   CGUUUCU-CAAGAAACGGCUCACAA   1   |||||||-|*||||||||||||||| targets:19   GCAAAGAAGCUCUUUGCCGAGUGUU   43 Target Full Sequence	3.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   CGUUUCUCAAGAAACGGCUCACAA   1   ||||||||*||||||||||||||| targets:100   GCAAAGAGCUCUUUGCCGAGUGUU   123 Target Full Sequence	1.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   CGUUUCUCAAGAAACGGCUCACAA   1   ||||||||*||||||||||||||* targets:60   GCAAAGAGCUCUUUGCCGAGUGUC   83 Target Full Sequence	2.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   CGUUUCU-CAAGAAACGGCUCACAA   1   |||||||-|*||||||||||||||| targets:19   GCAAAGAAGCUCUUUGCCGAGUGUU   43 Target Full Sequence	3.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   CGUUUCUCAAGAAACGGCUCACAA   1   ||||||||*||||||||||||||| targets:1980   GCAAAGAGCUCUUUGCCGAGUGUU   2003 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   CGUUUCUCAAGAAACGGCUCACAA   1   ||||||||*||||||||||||||| targets:1980   GCAAAGAGCUCUUUGCCGAGUGUU   2003 Target Full Sequence	1.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
XM_008671736.2	ncRNA:24   CGUUUCUCAAGAAACGGCUCACAA   1   |||||||*||*||||||||||||* targets:177   GCAAAGAUUUAUUUGCCGAGUGUA   200 Target Full Sequence	3.0	PREDICTED: Zea mays probable serine/threonine-protein kinase PBL28 (LOC103647166), mRNA	NA	coding protein	psRNATarget
JB166664.1	ncRNA:24   CGUUUCUCAAGAAACGGCUCACAA   1   *==|*|=*|||||||||||||||| targets:1   CUGACGGAUUCUUUGCCGAGUGUU   24 Target Full Sequence	2.0	Sequence 4328 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238333.1	ncRNA:24   CGUUUCUCAAGAAACGGCUCACAA   1   *==|*|=*|||||||||||||||| targets:1   CUGACGGAUUCUUUGCCGAGUGUU   24 Target Full Sequence	2.0	Sequence 4328 from Patent EP2985353	NA	coding protein	psRNATarget
HI406203.1	ncRNA:24   CGUUUCUCAAGAAACGGCUCACAA   1   *==|*|=*|||||||||||||||| targets:1   CUGACGGAUUCUUUGCCGAGUGUU   24 Target Full Sequence	2.0	Sequence 4328 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008680068.2	ncRNA:24   CGUUUCUC--AAGAAACGGCUCACAA   1   *==**|||--|||||||||||||||| targets:188   UUGUCGAGCCUUCUUUGCCGAGUGUU   213 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103653106 (LOC103653106), mRNA	NA	coding protein	psRNATarget