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BaseInfo

ncRNA ID novel_zma_miR9782
Species Zea mays
Class miRNA
Genome position Chr3:128465833-128465885 [+]
Reference genome RefGen_v4
Source SRR4237226
Length 24
Mature sequence(if miRNA) 30 - AGAUAUUUAGACCCUCGAGUACCU - 53
Stem-loop(if miRNA) --           G   CC    CCU
  GUGCUCGAGGG CUA  UGUC   A
  ||||||||||| |||  ||||   U
  CAUGAGCUCCC GAU  AUAG   C
UC           A   UU    AAA
Stem-loop sequence GUGCUCGAGGGGCUACCUGUCCCUAUCAAAGAUAUUUAGACCCUCGAGUACCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001151465.1
ncRNA:24   UCCAUGAGCUCCCAGAUUUAUAGA   1
  ||||||||||||||||||||=|||
targets:621   AGGUACUCGAGGGUCUAAAUGUCU   644

1.5 Zea mays uncharacterized LOC100278066 (LOC100278066), mRNA NA coding protein psRNATarget
EU971822.1
ncRNA:24   UCCAUGAGCUCCCAGAUUUAUAGA   1
  ||||||||||||||||||||=|||
targets:621   AGGUACUCGAGGGUCUAAAUGUCU   644

1.5 Zea mays clone 371122 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT018173.1
ncRNA:24   UCCAUGAGCUCCCAGAUUUAUAGA   1
  ||||||||||||||||||||=|||
targets:452   AGGUACUCGAGGGUCUAAAUGUCU   475

1.5 Zea mays clone EL01N0557C03.c mRNA sequence NA coding protein psRNATarget