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BaseInfo

ncRNA ID novel_zma_miR9780
Species Zea mays
Class miRNA
Genome position Chr3:100148208-100148264 [+]
Reference genome RefGen_v4
Source SRR4237226
Length 19
Mature sequence(if miRNA) 1 - CGAGAGUAGCGUGUACCCC - 19
Stem-loop(if miRNA) --        GC    A    --     A
  CGAGAGUA  GUGU CCCC  CUAGC A
  ||||||||  |||| ||||  ||||| G
  GCUCUCGU  CAUA GGGG  GGUCG A
GG        GU    A    UC     G
Stem-loop sequence CGAGAGUAGCGUGUACCCCCUAGCAAGAGGCUGGCUGGGGAAUACUGUGCUCUCGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ102997.1
ncRNA:19   CCCCAUGUGCGAUGAGAGC   1
  *|||||||=||||||||||
targets:46   AGGGUACAUGCUACUCUCG   64

2.5 TSA: Zea mays contig38653, mRNA sequence NA coding protein psRNATarget
EU943317.1
ncRNA:19   CCCCAUGUGCGAUGAGAGC   1
  *|||||||||||||||||*
targets:1686   AGGGUACACGCUACUCUCA   1704

2.0 Zea mays clone 1597341 mRNA sequence NA coding protein psRNATarget
BT085110.2
ncRNA:19   CCCCAUGUGCGAUGAGAGC   1
  *|||||||*||||||||||
targets:806   AGGGUACAAGCUACUCUCG   824

2.5 Zea mays full-length cDNA clone ZM_BFb0291A01 mRNA, complete cds NA coding protein psRNATarget