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BaseInfo

ncRNA ID	novel_zma_miR9779
Species	Zea mays
Class	miRNA
Genome position	Chr3:7012554-7012605 [+]
Reference genome	RefGen_v4
Source	SRR4237226
Length	24
Mature sequence(if miRNA)	29 - UCUUUGCCGAGUGUCCGCCAGCCU - 52
Stem-loop(if miRNA)	--UUA     -              U      GGUGG CACUCGGCAAAGAG U      ||||| |||||||||||||| U      CCGCC GUGAGCCGUUUCUC U UCCGA     U              C
Stem-loop sequence	UUAGGUGGCACUCGGCAAAGAGUUUUCCUCUUUGCCGAGUGUCCGCCAGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238333.1	ncRNA:24   UCCGACCGCCUGUGAGCCGUUUCU   1   *|||*|||*||||||||||||||| targets:24   UGGCCGGCAGACACUCGGCAAAGA   47 Target Full Sequence	1.0	Sequence 4328 from Patent EP2985353	NA	coding protein	psRNATarget
HI406203.1	ncRNA:24   UCCGACCGCCUGUGAGCCGUUUCU   1   *|||*|||*||||||||||||||| targets:24   UGGCCGGCAGACACUCGGCAAAGA   47 Target Full Sequence	1.0	Sequence 4328 from Patent EP2074227	NA	coding protein	psRNATarget
JB166664.1	ncRNA:24   UCCGACCGCCUGUGAGCCGUUUCU   1   *|||*|||*||||||||||||||| targets:24   UGGCCGGCAGACACUCGGCAAAGA   47 Target Full Sequence	1.0	Sequence 4328 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020538020.1	ncRNA:24   UCCG----ACCGCCUGUGAGCCGUUUCU   1   ||||----|*||||=||||||||||||* targets:247   AGGCCCAAUCGCGGGCACUCGGCAAAGU   274 Target Full Sequence	3.0	PREDICTED: Zea mays CASP-like protein 4A1 (LOC109939705), mRNA	NA	coding protein	psRNATarget
EZ087925.1	ncRNA:24   UC-CG----ACCGCCUGUGAGCCGUUUCU   1   ||-||----||*|||=||||||||||||| targets:64   AGUGCCUUUUGUCGGGCACUCGGCAAAGA   92 Target Full Sequence	2.0	TSA: Zea mays contig23571, mRNA sequence	NA	coding protein	psRNATarget
XM_008648525.2	ncRNA:24   UC-CG----ACCGCCUGUGAGCCGUUUCU   1   ||-||----||*|||=||||||||||||| targets:1395   AGUGCCUUUUGUCGGGCACUCGGCAAAGA   1423 Target Full Sequence	2.0	PREDICTED: Zea mays benzoate O-methyltransferase-like (LOC103628300), mRNA	NA	coding protein	psRNATarget
BT067215.1	ncRNA:24   UC-CG----ACCGCCUGUGAGCCGUUUCU   1   ||-||----||*|||=||||||||||||| targets:1163   AGUGCCUUUUGUCGGGCACUCGGCAAAGA   1191 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:24   UC-CG----ACCGCCUGUGAGCCGUUUCU   1   ||-||----||*|||=||||||||||||| targets:1300   AGUGCCUUUUGUCGGGCACUCGGCAAAGA   1328 Target Full Sequence	2.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
BT064046.1	ncRNA:24   UC-CG----ACCGCCUGUGAGCCGUUUCU   1   ||-||----||*|||=||||||||||||| targets:1300   AGUGCCUUUUGUCGGGCACUCGGCAAAGA   1328 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
LQ238855.1	ncRNA:24   UC-CG-ACCGCCUGUGAGCCGUUUCU   1   ||-|=-||||*||||||||*|||||| targets:94   AGUGUGUGGCUGACACUCGACAAAGA   119 Target Full Sequence	2.5	Sequence 4850 from Patent EP2985353	NA	coding protein	psRNATarget
JB167186.1	ncRNA:24   UC-CG-ACCGCCUGUGAGCCGUUUCU   1   ||-|=-||||*||||||||*|||||| targets:94   AGUGUGUGGCUGACACUCGACAAAGA   119 Target Full Sequence	2.5	Sequence 4850 from Patent EP2559767	NA	coding protein	psRNATarget
HI406725.1	ncRNA:24   UC-CG-ACCGCCUGUGAGCCGUUUCU   1   ||-|=-||||*||||||||*|||||| targets:94   AGUGUGUGGCUGACACUCGACAAAGA   119 Target Full Sequence	2.5	Sequence 4850 from Patent EP2074227	NA	coding protein	psRNATarget
EU962802.1	ncRNA:24   UC-CG----ACCGCCUGUGAGCCGUUUCU   1   ||-||----||*|||=||||||||||||= targets:856   AGUGCCUUUUGUCGGGCACUCGGCAAAGG   884 Target Full Sequence	3.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget