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BaseInfo

ncRNA ID novel_zma_miR9778
Species Zea mays
Class miRNA
Genome position Chr5:211331298-211331377 [+]
Reference genome RefGen_v4
Source SRR1997865
Length 24
Mature sequence(if miRNA) 1 - GGCUGGCAGUGGCGGCUGGGAACU - 24
Stem-loop(if miRNA) --        -G         GGA   G GA   GG    U
  GGCUGGCA  UGGCGGCUG   ACU G  ACU  GAUU G
  ||||||||  |||||||||   ||| |  |||  ||||
  UUGGCUGU  GCCGUCGGC   UGG U  UGG  UUAA G
GA        GA         -GG   G GG   GA    G
Stem-loop sequence GGCUGGCAGUGGCGGCUGGGAACUGGGAACUGGGAUUUGGGAAUUAGGGUGGUGGGUGGCGGCUGCCGAGUGUCGGUUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008676885.2
ncRNA:24   UCAAGGGU---CGGCGGUGACGGUCGG   1
  ****||||---||||||||||||||||
targets:54   CAAACCCAAGCGCCGCCACUGCCAGCC   80

3.0 PREDICTED: Zea mays Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1 (LOC103651267), transcript variant X2, mRNA NA coding protein psRNATarget