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BaseInfo

ncRNA ID	novel_zma_miR9770
Species	Zea mays
Class	miRNA
Genome position	Chr3:132102212-132102347 [-]
Reference genome	RefGen_v4
Source	SRR4237226
Length	24
Mature sequence(if miRNA)	113 - UCUACAAACAAUACAAUCUACAGU - 136
Stem-loop(if miRNA)	--UCUAC       AC        ----------        - A      UU   C      G   AACUAC        AAACAAU  AAUCUACA          GUGCAAAA G UGUUUU  UGA CAUAUA GUG      C        |||||||  ||||||||          |||||||| | ||||||  ||| |||||| |||      G        UUUGUUA  UUAGAUGU          UACGUUUU C ACAAAA  ACU GUAUAU CAC      U UGAUAUA       CA        UAUAUUUUGC        G C      UC   A      A   GUUACA
Stem-loop sequence	UCUACAAACAAUACAAUCUACAGUGCAAAAGAUGUUUUUUUGACCAUAUAGGUGAACUACCGUACAUUGCACAUAUAUGAUCACUAAAACACCGUUUUGCAUCGUUUUAUAUUGUAGAUUACAUUGUUUAUAUAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001111823.1	ncRNA:24   UGACAUCUAACAUAACAAACAUCU   1   |||||||||||||||||||||||| targets:7592   ACUGUAGAUUGUAUUGUUUGUAGA   7615 Target Full Sequence	0.0	Zea mays uncharacterized LOC542211 (cl3114_1(600)), mRNA	NA	coding protein	psRNATarget
AY894697.1	ncRNA:24   UGACAUCUAACAUAACAAACAUCU   1   |||||||||||||||||||||||| targets:7592   ACUGUAGAUUGUAUUGUUUGUAGA   7615 Target Full Sequence	0.0	Zea mays target of rapamycin mRNA, complete cds	NA	coding protein	psRNATarget
EU973003.1	ncRNA:24   UGACAUCUAACAUAACAAACAUCU   1   |||||||||||||||*|||||||| targets:1191   ACUGUAGAUUGUAUUAUUUGUAGA   1214 Target Full Sequence	1.5	Zea mays clone 391534 DNA-3-methyladenine glycosylase 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158478.1	ncRNA:24   UGACAUCUAACAUAACAAACAUCU   1   |||||||||||||||*|||||||| targets:1191   ACUGUAGAUUGUAUUAUUUGUAGA   1214 Target Full Sequence	1.5	Zea mays DNA-3-methyladenine glycosylase 1 (LOC100285587), mRNA	NA	coding protein	psRNATarget
XM_008668471.2	ncRNA:24   UGACAUCUAACAUAACAAACAUCU   1   |=||||||||||||||||||||*| targets:1658   AUUGUAGAUUGUAUUGUUUGUAAA   1681 Target Full Sequence	1.5	PREDICTED: Zea mays probable cystathionine gamma-synthase 2 (LOC103645417), mRNA	NA	coding protein	psRNATarget
EU948729.1	ncRNA:24   UGACAUCUAACAUAACAAACAUCU   1   |||*||||*||*|||||||||||| targets:361   ACUCUAGACUGCAUUGUUUGUAGA   384 Target Full Sequence	2.5	Zea mays clone 383146 mRNA sequence	NA	coding protein	psRNATarget
BT016910.1	ncRNA:24   UGACAUCUAACAUAACAAACAUCU   1   |*||||*|||*||||||||||||| targets:163   AGUGUAAAUUAUAUUGUUUGUAGA   186 Target Full Sequence	2.0	Zea mays clone Contig743 mRNA sequence	NA	coding protein	psRNATarget
EZ058715.1	ncRNA:24   UGACAUCUAACAUAACAAACAUCU   1   |*||||*|||*||||||||||||| targets:79   AGUGUAAAUUAUAUUGUUUGUAGA   102 Target Full Sequence	2.0	TSA: Zea mays contig59837, mRNA sequence	NA	coding protein	psRNATarget