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BaseInfo

ncRNA ID novel_zma_miR9763
Species Zea mays
Class miRNA
Genome position Chr2:22127634-22127753 [-]
Reference genome RefGen_v4
Source SRR4237226
Length 24
Mature sequence(if miRNA) 1 - AAGUUAGCCAUCAAACCAAACAGG - 24
Stem-loop(if miRNA) --         -C        AUG                -------------        CG   G
  UGUUUGGUU  GUGGCUAA   UGCCACACUUUGCCUA             AGGUUAGU  UUC A
  |||||||||  ||||||||   ||||||||||||||||             ||||||||  ||| A
  ACAAACCAA  UACCGAUU   ACGGUGUGAAACGGAU             UCCAAUCA  AAG U
GG         AC        -GA                UGAAAACACGGAU        AG   U
Stem-loop sequence UGUUUGGUUCGUGGCUAAAUGUGCCACACUUUGCCUAAGGUUAGUCGUUCGAAUUGAAGAACUAACCUUAGGCACAAAAGUUAGGCAAAGUGUGGCAAGUUAGCCAUCAAACCAAACAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008660313.2
ncRNA:24   GGACAAACCAAACUACCGAUUGAA   1
  ||||||||||||||||||||||||
targets:696   CCUGUUUGGUUUGAUGGCUAACUU   719

0.0 PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008660311.2
ncRNA:24   GGACAAACCAAACUACCGAUUGAA   1
  ||||||||||||||||||||||||
targets:696   CCUGUUUGGUUUGAUGGCUAACUU   719

0.0 PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008660309.2
ncRNA:24   GGACAAACCAAACUACCGAUUGAA   1
  ||||||||||||||||||||||||
targets:696   CCUGUUUGGUUUGAUGGCUAACUU   719

0.0 PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008670840.2
ncRNA:24   GGACAAACCAAACUACCGAUUGAA   1
  ||||||||||||||||||||||||
targets:2661   CCUGUUUGGUUUGAUGGCUAACUU   2684

0.0 PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA NA coding protein psRNATarget
BT062066.1
ncRNA:24   GGACAAACCAAACUACCGAUUGAA   1
  |=||||||||||||||||||||||
targets:1510   CUUGUUUGGUUUGAUGGCUAACUU   1533

0.0 Zea mays full-length cDNA clone ZM_BFb0211I24 mRNA, complete cds NA coding protein psRNATarget
BT064093.1
ncRNA:24   GGACAAACCAAACUACCGAUUGAA   1
  |=||||||||||||||||||||||
targets:1925   CUUGUUUGGUUUGAUGGCUAACUU   1948

0.0 Zea mays full-length cDNA clone ZM_BFc0137J11 mRNA, complete cds NA coding protein psRNATarget
NM_001175121.1
ncRNA:24   GGACAAACCAAACUACCGAUUGAA   1
  |=||||||||||||||||||||||
targets:1925   CUUGUUUGGUUUGAUGGCUAACUU   1948

0.0 Zea mays UDP-glycosyltransferase 83A1 (LOC100382376), mRNA NA coding protein psRNATarget
XM_008660020.2
ncRNA:24   GGACAAACCAAACUACCGAUUGAA   1
  =|||||||||||||||*|||||||
targets:2994   UCUGUUUGGUUUGAUGUCUAACUU   3017

1.5 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008660021.2
ncRNA:24   GGACAAACCAAACUACCGAUUGAA   1
  =|||||||||||||||*|||||||
targets:3122   UCUGUUUGGUUUGAUGUCUAACUU   3145

1.5 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020543539.1
ncRNA:24   GGACAAACCAAACUACCGAUUGAA   1
  =|||||||||||||||*|||||||
targets:3129   UCUGUUUGGUUUGAUGUCUAACUU   3152

1.5 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA NA coding protein psRNATarget
BT033837.1
ncRNA:24   GGACAAACCAAACUACCGAUUGAA   1
  ||||||||*|||||||*|||||||
targets:917   CCUGUUUGAUUUGAUGCCUAACUU   940

2.5 Zea mays full-length cDNA clone ZM_BFc0155O23 mRNA, complete cds NA coding protein psRNATarget
NM_001137099.2
ncRNA:24   GGACAAACCAAACUACCGAUUGAA   1
  ||||||||*|||||||*|||||||
targets:1405   CCUGUUUGAUUUGAUGCCUAACUU   1428

2.5 Zea mays KDEL-tailed cysteine endopeptidase CEP1 (cl903_-1), mRNA NA coding protein psRNATarget
AY109437.1
ncRNA:24   GGACAAACCAAACUACCGAUUGAA   1
  ||||||||*|||||||*|||||||
targets:1415   CCUGUUUGAUUUGAUGCCUAACUU   1438

2.5 Zea mays CL903_-1 mRNA sequence NA coding protein psRNATarget
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