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BaseInfo

ncRNA ID	novel_zma_miR9744
Species	Zea mays
Class	miRNA
Genome position	Chr1:238907416-238907530 [-]
Reference genome	RefGen_v4
Source	SRR4237226
Length	24
Mature sequence(if miRNA)	1 - UUUGGGAUUAUAAUCUAUGUAGAU - 24
Stem-loop(if miRNA)	--A  G                        UCU  U     UUAAGC    A   G   U    UA AUAGAUUAUAAUCCCAAACAAACA   UC AAGUC      CUUC UUU CUC U    || ||||||||||||||||||||||||   || |||||      |||| ||| |||    AU UAUCUAAUAUUAGGGUUUGUUUGU   GG UUCAG      GAAG AAA GAG C UAG  G                        CCC  U     -----U    A   A   A
Stem-loop sequence	AUAGAUAGAUUAUAAUCCCAAACAAACAUCUUCUAAGUCUUAAGCCUUCAUUUGCUCUUCAGAGAAAAAGAAGUGACUUUGGCCCUGUUUGUUUGGGAUUAUAAUCUAUGUAGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ078154.1	ncRNA:24   UAGAUGUAUCUAAUAUUAGGGUUU   1   |||||=|||||||||||||||||| targets:54   AUCUAUAUAGAUUAUAAUCCCAAA   77 Target Full Sequence	1.0	TSA: Zea mays contig13793, mRNA sequence	NA	coding protein	psRNATarget
NM_001136845.1	ncRNA:24   UAGAUGUAUCUAAUAUUAGGGUUU   1   |||||||||*|||||||||=|||| targets:379   AUCUACAUAAAUUAUAAUCUCAAA   402 Target Full Sequence	2.5	Zea mays chaperone DNA J2 (cdj2), mRNA	NA	coding protein	psRNATarget
EZ064625.1	ncRNA:24   UAGAUGUAUCUAAUAUUAGGGUUU   1   ||||=*|||||||||||||||||| targets:15   AUCUGAAUAGAUUAUAAUCCCAAA   38 Target Full Sequence	1.0	TSA: Zea mays contig00257, mRNA sequence	NA	coding protein	psRNATarget
XM_008682894.2	ncRNA:24   UAGAUGUAUCUAAUAUUAGGGUUU   1   ||||=*|*|||||||||||||||| targets:5055   AUCUGGACAGAUUAUAAUCCCAAA   5078 Target Full Sequence	2.0	PREDICTED: Zea mays transducin family protein / WD-40 repeat family protein (si618080f12(37)), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008669523.2	ncRNA:24   UAGAUGUAUCUAAUAUUAGGGUUU   1   *|=||*|*|||||||||||||||| targets:2175   UUUUAGACAGAUUAUAAUCCCAAA   2198 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100278420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945446.1	ncRNA:24   UAGAUGUAUCUAAUAUUAGGGUUU   1   ||||=*||||||||||||||*||| targets:491   AUCUGGAUAGAUUAUAAUCCAAAA   514 Target Full Sequence	2.5	Zea mays clone 273503 mRNA sequence	NA	coding protein	psRNATarget
EZ089583.1	ncRNA:24   UAGAUGUAUCUAAUAUUAGGGUUU   1   ||=||*=*|||||||||||||||| targets:14   AUUUAGGCAGAUUAUAAUCCCAAA   37 Target Full Sequence	3.0	TSA: Zea mays contig25229, mRNA sequence	NA	coding protein	psRNATarget
EU952235.1	ncRNA:24   UAGA-----UGUAUCUAAUAUUAGGGUUU   1   ||=|-----|*||||||*||||||||||| targets:1268   AUUUUUAGAAAAUAGAUAAUAAUCCCAAA   1296 Target Full Sequence	2.5	Zea mays clone 1235057 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget