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BaseInfo

ncRNA ID	novel_zma_miR9742
Species	Zea mays
Class	miRNA
Genome position	Chr1:247040977-247041092 [-]
Reference genome	RefGen_v4
Source	SRR4237226
Length	24
Mature sequence(if miRNA)	93 - UUUCCGGUUGACGUCUUUGAUCAC - 116
Stem-loop(if miRNA)	UUUC  -      G C           -A    U   GA  --G    A  C  AA  CG     CG GUUGAC U UUUGAUCACAC  UGUC GGC  GU   AUGC CA AU  CG  A     || |||||| | |||||||||||  |||| |||  ||   |||| || ||  ||     GC CGAUUG A GAGCUAGUGUG  GCAG UCG  CA   UAUG GU UA  GC  C UCGA  G      G U           GA    -   AG  AGG    A  -  GA  AG
Stem-loop sequence	UUUCCGGUUGACGUCUUUGAUCACACAUGUCUGGCGAGUGAUGCACACAUAACGCGACGACGAGAUUGAGUAUGGAACGAGCUGACGAGGUGUGAUCGAGUAGGUUAGCGCGAGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU949083.1	ncRNA:24   CACUAGUUUCUGCAGUUGGCCUUU   1   |||||||||||||||||||||||| targets:647   GUGAUCAAAGACGUCAACCGGAAA   670 Target Full Sequence	0.0	Zea mays clone 395618 mRNA sequence	NA	coding protein	psRNATarget
EU965418.1	ncRNA:24   CACUAGUUUCUGCAGUUGGCCUUU   1   |||||||||||||||||||||||| targets:1158   GUGAUCAAAGACGUCAACCGGAAA   1181 Target Full Sequence	0.0	Zea mays clone 285875 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT083549.1	ncRNA:24   CACUAGUUUCUGCAGUUGGCCUUU   1   |||||||||||||||||||||=|| targets:1270   GUGAUCAAAGACGUCAACCGGGAA   1293 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0011B01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177036.1	ncRNA:24   CACUAGUUUCUGCAGUUGGCCUUU   1   |||||||||||||||||||||=|| targets:1270   GUGAUCAAAGACGUCAACCGGGAA   1293 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384513 (LOC100384513), mRNA	NA	coding protein	psRNATarget
XM_020544378.1	ncRNA:24   CACUAGUUUCUGCAGUUGGCCUUU   1   |||||||||||||||||||||=|| targets:2061   GUGAUCAAAGACGUCAACCGGGAA   2084 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103638034 (LOC103638034), mRNA	NA	coding protein	psRNATarget
EZ070241.1	ncRNA:24   CACUAGUUUCUGCAGUUGGCCUUU   1   |||||||||||||||||||||*|| targets:22   GUGAUCAAAGACGUCAACCGGUAA   45 Target Full Sequence	1.5	TSA: Zea mays contig05878, mRNA sequence	NA	coding protein	psRNATarget
NM_001143567.1	ncRNA:24   CACUAGUUUCUGCAGUUGGCCUUU   1   *||||||||||=|||||||||||| targets:870   CUGAUCAAAGAUGUCAACCGGAAA   893 Target Full Sequence	1.5	Zea mays uncharacterized LOC100217210 (LOC100217210), mRNA	NA	coding protein	psRNATarget
BT038130.1	ncRNA:24   CACUAGUUUCUGCAGUUGGCCUUU   1   *||||||||||=|||||||||||| targets:870   CUGAUCAAAGAUGUCAACCGGAAA   893 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0213I04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148449.1	ncRNA:24   CACUAGUUUCUGCAGUUGGCCUUU   1   ||||||||*||||||||||||||| targets:1284   GUGAUCAAUGACGUCAACCGGAAA   1307 Target Full Sequence	1.0	Zea mays uncharacterized LOC100274070 (LOC100274070), mRNA	NA	coding protein	psRNATarget
BT042309.1	ncRNA:24   CACUAGUUUCUGCAGUUGGCCUUU   1   ||||||||*||||||||||||||| targets:1284   GUGAUCAAUGACGUCAACCGGAAA   1307 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0199F16 mRNA, complete cds	NA	coding protein	psRNATarget
EU947758.1	ncRNA:24   CACUAGUUUCUGCAGUUGGCCUUU   1   ||||||||*||||||||||||||| targets:1046   GUGAUCAAUGACGUCAACCGGAAA   1069 Target Full Sequence	1.0	Zea mays clone 356780 mRNA sequence	NA	coding protein	psRNATarget
XM_008660289.2	ncRNA:24   CACUAGUUUCUGCAGUUGGCCUUU   1   |||=||||||||||||||||*||| targets:1022   GUGGUCAAAGACGUCAACCGAAAA   1045 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280044 (LOC100280044), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT055433.1	ncRNA:24   CACUAGUUUCUGCAGUUGGCCUUU   1   |||=||||||||||||||||*||| targets:1149   GUGGUCAAAGACGUCAACCGAAAA   1172 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0191H21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152985.1	ncRNA:24   CACUAGUUUCUGCAGUUGGCCUUU   1   |||=||||||||||||||||*||| targets:1149   GUGGUCAAAGACGUCAACCGAAAA   1172 Target Full Sequence	1.5	Zea mays uncharacterized LOC100280044 (LOC100280044), mRNA	NA	coding protein	psRNATarget
EZ067893.1	ncRNA:24   CACUAGUUUCUGCAGUUGGCCUUU   1   ||||||||*||||||||||*|||| targets:551   GUGAUCAAUGACGUCAACCAGAAA   574 Target Full Sequence	2.5	TSA: Zea mays contig03528, mRNA sequence	NA	coding protein	psRNATarget
BT060717.1	ncRNA:24   CACUAGUUUCUGCAGUUGGCCUUU   1   ||||||||*||||||||||*|||| targets:1346   GUGAUCAAUGACGUCAACCAGAAA   1369 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0038H04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165679.1	ncRNA:24   CACUAGUUUCUGCAGUUGGCCUUU   1   ||||||||*||||||||||*|||| targets:1461   GUGAUCAAUGACGUCAACCAGAAA   1484 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304234 (LOC100304234), mRNA	NA	coding protein	psRNATarget
BT060540.1	ncRNA:24   CACUAGUUUCUGCAGUUGGCCUUU   1   ||||||||*||||||||||*|||| targets:1461   GUGAUCAAUGACGUCAACCAGAAA   1484 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0013G01 mRNA, complete cds	NA	coding protein	psRNATarget