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BaseInfo

ncRNA ID	novel_zma_miR9740
Species	Zea mays
Class	miRNA
Genome position	Chr5:183379345-183379399 [+]
Reference genome	RefGen_v4
Source	SRR1997865
Length	24
Mature sequence(if miRNA)	1 - GCGCCAGGUUGCGGACCGUCCGGC - 24
Stem-loop(if miRNA)	-GCGC     U      C    --          CAGGU GCGGAC GUCC  GGCCC      ||||| |||||| ||||  ||||C      GUCCG CGCCUG CAGG  CCGGA GACCA     -      C    CG
Stem-loop sequence	GCGCCAGGUUGCGGACCGUCCGGCCCCAGGCCGCGGACCGUCCGCGCCUGACCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ104830.1	ncRNA:24   CGGCCUGCCAGGCGUUGGACCGCG   1   ||||||||||||||=||||||||| targets:44   GCCGGACGGUCCGCGACCUGGCGC   67 Target Full Sequence	1.5	TSA: Zea mays contig40487, mRNA sequence	NA	coding protein	psRNATarget
EZ099059.1	ncRNA:24   CGGCCUGCCAGGCGUUGGACCGCG   1   ||||||||||||||=||||||||| targets:29   GCCGGACGGUCCGCGACCUGGCGC   52 Target Full Sequence	1.5	TSA: Zea mays contig34714, mRNA sequence	NA	coding protein	psRNATarget
BT061906.1	ncRNA:24   CGGCCUGCCAGGCGUUGGACCGCG   1   ||||||||||||||=||||||||| targets:214   GCCGGACGGUCCGCGACCUGGCGC   237 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0196M13 mRNA, complete cds	NA	coding protein	psRNATarget
EU971146.1	ncRNA:24   CGGCCUGCCAGGCGUUGGACCGCG   1   ||||||||||||||=||||||||| targets:350   GCCGGACGGUCCGCGACCUGGCGC   373 Target Full Sequence	1.5	Zea mays clone 358377 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU968855.1	ncRNA:24   CGGCCUGCCAGGCGUUGGACCGCG   1   ||||||||||||||=||||||||| targets:651   GCCGGACGGUCCGCGACCUGGCGC   674 Target Full Sequence	1.5	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
BT034345.1	ncRNA:24   CGGCCUGCCAGGCGUUGGACCGCG   1   ||||||||||||||=||||||||| targets:686   GCCGGACGGUCCGCGACCUGGCGC   709 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0009F02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020540955.1	ncRNA:24   CGGCCUGCCAGGCGUUGGACCGCG   1   ||||||||||||||=||||||||= targets:949   GCCGGACGGUCCGCGACCUGGCGU   972 Target Full Sequence	2.5	PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase At1g07650 (LOC103632613), transcript variant X5, mRNA	NA	coding protein	psRNATarget
BT064749.1	ncRNA:24   CG-GCCUGCCAGGCGUUGGACCGCG   1   ||-||||||||||||=||||||||| targets:1681   GCGCGGACGGUCCGCGACCUGGCGC   1705 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0101G18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175289.1	ncRNA:24   CG-GCCUGCCAGGCGUUGGACCGCG   1   ||-||||||||||||=||||||||| targets:1681   GCGCGGACGGUCCGCGACCUGGCGC   1705 Target Full Sequence	1.5	Zea mays uncharacterized LOC100382557 (LOC100382557), mRNA	NA	coding protein	psRNATarget
LQ241925.1	ncRNA:24   CGGCCUGCCAGGCGUUGGACCGCG   1   |||*||||||||||=||||||||| targets:41   GCCAGACGGUCCGCGACCUGGCGC   64 Target Full Sequence	1.5	Sequence 7920 from Patent EP2985353	NA	coding protein	psRNATarget
JB170256.1	ncRNA:24   CGGCCUGCCAGGCGUUGGACCGCG   1   |||*||||||||||=||||||||| targets:41   GCCAGACGGUCCGCGACCUGGCGC   64 Target Full Sequence	1.5	Sequence 7920 from Patent EP2559767	NA	coding protein	psRNATarget
HI409795.1	ncRNA:24   CGGCCUGCCAGGCGUUGGACCGCG   1   |||*||||||||||=||||||||| targets:41   GCCAGACGGUCCGCGACCUGGCGC   64 Target Full Sequence	1.5	Sequence 7920 from Patent EP2074227	NA	coding protein	psRNATarget
EU952231.1	ncRNA:24   CGGCCUGCCAGGCGUUGGACCGCG   1   |||*||||||||||=||||||||| targets:450   GCCAGACGGUCCGCGACCUGGCGC   473 Target Full Sequence	1.5	Zea mays clone 1234152 mRNA sequence	NA	coding protein	psRNATarget
EZ049111.1	ncRNA:24   CGGCCUGCCAGGCGUUGGACCGCG   1   **||||||||||||=||||||||| targets:25   UGCGGACGGUCCGCGACCUGGCGC   48 Target Full Sequence	1.5	TSA: Zea mays contig50229, mRNA sequence	NA	coding protein	psRNATarget