ncRNA ID | novel_zma_miR9730 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr9:163695-163875 [+] |
Reference genome | RefGen_v4 |
Source | SRR4237226 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AGGACCAUAGCACUCGACAAAGAA - 24 |
Stem-loop(if miRNA) |
--AG A  --A                 -  --A  ACCU   CA  G  -A                   AG  GCCC               AG     G CC   UAGCACUCGACAAAGAA CC   AG    GGG  CC GU  UAGGUUCUUUGCCGAGUGU  UG    UGGCACUCGGCAAAG  A     | ||   ||||||||||||||||| ||   ||    |||  || ||  |||||||||||||||||||  ||    |||||||||||||||  C     C GG   GUCGUGAGCUGUUUUUU GG   UC    CCC  GG UA  GUCCAAGAAACGGCUCACG  AU    ACCGUGAGCCGUUUC  A CAGA -  CAG                 A  CAG  ---G   AG  G  CA                   AA  --AU               GC |
Stem-loop sequence | AGGACCAUAGCACUCGACAAAGAACCAAGACCUGGGCACCGGUAUAGGUUCUUUGCCGAGUGUAGUGGCCCUGGCACUCGGCAAAGAGACACGCUUUGCCGAGUGCCAUAUAAAGCACUCGGCAAAGAACCUGACAUGGGGACCCGCUGACGGAUUUUUUGUCGAGUGCUGGACGGCAGAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
LQ239157.1 |
|
2.5 | Sequence 5152 from Patent EP2985353 | NA | coding protein | psRNATarget | |||||||||
JB167488.1 |
|
2.5 | Sequence 5152 from Patent EP2559767 | NA | coding protein | psRNATarget | |||||||||
HI407027.1 |
|
2.5 | Sequence 5152 from Patent EP2074227 | NA | coding protein | psRNATarget |