Search result

BaseInfo

ncRNA ID novel_zma_miR9730
Species Zea mays
Class miRNA
Genome position Chr9:163695-163875 [+]
Reference genome RefGen_v4
Source SRR4237226
Length 24
Mature sequence(if miRNA) 1 - AGGACCAUAGCACUCGACAAAGAA - 24
Stem-loop(if miRNA) --AG A  --A                 -  --A  ACCU   CA  G  -A                   AG  GCCC               AG
    G CC   UAGCACUCGACAAAGAA CC   AG    GGG  CC GU  UAGGUUCUUUGCCGAGUGU  UG    UGGCACUCGGCAAAG  A
    | ||   ||||||||||||||||| ||   ||    |||  || ||  |||||||||||||||||||  ||    |||||||||||||||  C
    C GG   GUCGUGAGCUGUUUUUU GG   UC    CCC  GG UA  GUCCAAGAAACGGCUCACG  AU    ACCGUGAGCCGUUUC  A
CAGA -  CAG                 A  CAG  ---G   AG  G  CA                   AA  --AU               GC
Stem-loop sequence AGGACCAUAGCACUCGACAAAGAACCAAGACCUGGGCACCGGUAUAGGUUCUUUGCCGAGUGUAGUGGCCCUGGCACUCGGCAAAGAGACACGCUUUGCCGAGUGCCAUAUAAAGCACUCGGCAAAGAACCUGACAUGGGGACCCGCUGACGGAUUUUUUGUCGAGUGCUGGACGGCAGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ239157.1
ncRNA:24   AAGAAACAGCUCACGAUACCAGGA   1
  |||||||*||||||||||||||=|
targets:55   UUCUUUGCCGAGUGCUAUGGUCUU   78

2.5 Sequence 5152 from Patent EP2985353 NA coding protein psRNATarget
JB167488.1
ncRNA:24   AAGAAACAGCUCACGAUACCAGGA   1
  |||||||*||||||||||||||=|
targets:55   UUCUUUGCCGAGUGCUAUGGUCUU   78

2.5 Sequence 5152 from Patent EP2559767 NA coding protein psRNATarget
HI407027.1
ncRNA:24   AAGAAACAGCUCACGAUACCAGGA   1
  |||||||*||||||||||||||=|
targets:55   UUCUUUGCCGAGUGCUAUGGUCUU   78

2.5 Sequence 5152 from Patent EP2074227 NA coding protein psRNATarget