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BaseInfo

ncRNA ID	ath-miRf10105-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - UUGGUGGAGAAUCGUUCGGU - NA
Stem-loop(if miRNA)	UUUUUUUUCCCAUCUUUU   CAUUUAAUGUG CUUCACUACCGAACGAUUCUUCACCAAUUU                  CAU           C ||||||||||||||||||||||||||||||                  ||| GAAGUGAUGGCUUGCUAAGAGGUGGUUAAG                  UGU           A                               ------------------   UAGAUUCUUUA
Stem-loop sequence	CUUCACUACCGAACGAUUCUUCACCAAUUUUUUUUUUUCCCAUCUUUUCAUCAUUUAAUGUGCAAUUUCUUAGAUUGUGAAUUGGUGGAGAAUCGUUCGGUAGUGAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001341731.1	ncRNA:20   UGGCUUGCUAAGAGGUGGUU   1   ||||=|||*||||||||||| targets:597   ACCGGACGCUUCUCCACCAA   616 Target Full Sequence	2.5	Arabidopsis thaliana 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (GA20OX1), mRNA	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein(GA20OX1)	coding protein	psRNATarget
BX827770.1	ncRNA:20   UGGCUUGCUAAGAGGUGGUU   1   ||||=|||*||||||||||| targets:431   ACCGGACGCUUCUCCACCAA   450 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH1ZF05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_118674.5	ncRNA:20   UGGCUUGCUAAGAGGUGGUU   1   ||||=|||*||||||||||| targets:597   ACCGGACGCUUCUCCACCAA   616 Target Full Sequence	2.5	Arabidopsis thaliana 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (GA20OX1), mRNA	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein(GA20OX1)	coding protein	psRNATarget
AK221496.1	ncRNA:20   UGGCUUGCUAAGAGGUGGUU   1   ||||=|||*||||||||||| targets:469   ACCGGACGCUUCUCCACCAA   488 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for gibberellin 20-oxidase - Arabidopsis thaliana, complete cds, clone: RAFL07-51-P15	NA	coding protein	psRNATarget
X83379.1	ncRNA:20   UGGCUUGCUAAGAGGUGGUU   1   ||||=|||*||||||||||| targets:432   ACCGGACGCUUCUCCACCAA   451 Target Full Sequence	2.5	A.thaliana mRNA for gibberellin 20-oxidase (1259 bp)	NA	coding protein	psRNATarget
BX826588.1	ncRNA:20   UGGCUUGCUAAGAGGUGGUU   1   ||||=|||*||||||||||| targets:451   ACCGGACGCUUCUCCACCAA   470 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB44ZF04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX826587.1	ncRNA:20   UGGCUUGCUAAGAGGUGGUU   1   ||||=|||*||||||||||| targets:455   ACCGGACGCUUCUCCACCAA   474 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB44ZD05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_001332797.1	ncRNA:20   UGGCUUGCUAAGAGGUGGUU   1   |||*|||*|||||||||||| targets:2828   ACCCAACAAUUCUCCACCAA   2847 Target Full Sequence	2.5	Arabidopsis thaliana Pre-mRNA-splicing factor 3 mRNA	Pre-mRNA-splicing factor 3(AT1G28060)	coding protein	psRNATarget
NM_102572.3	ncRNA:20   UGGCUUGCUAAGAGGUGGUU   1   |||*|||*|||||||||||| targets:39   ACCCAACAAUUCUCCACCAA   58 Target Full Sequence	2.5	Arabidopsis thaliana ATP-dependent RNA helicase mRNA	ATP-dependent RNA helicase(AT1G28070)	coding protein	psRNATarget